* installing *source* package ‘flan’ ... ** package ‘flan’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘clang version 18.1.4’ using C++ compiler: ‘clang version 18.1.4’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/flan/src' /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I../inst/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppGSL/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c FLAN_Clone.cpp -o FLAN_Clone.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I../inst/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppGSL/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c FLAN_MutationModel.cpp -o FLAN_MutationModel.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I../inst/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppGSL/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c FLAN_Sim.cpp -o FLAN_Sim.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I../inst/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppGSL/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c MATH_Function.cpp -o MATH_Function.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I../inst/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppGSL/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c init.c -o init.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I../inst/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppGSL/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c rcpp_flan_module.cpp -o rcpp_flan_module.o FLAN_Clone.cpp:150:11: warning: variable 'i' set but not used [-Wunused-but-set-variable] 150 | int i=0; | ^ FLAN_Clone.cpp:125:9: warning: variable 'g' set but not used [-Wunused-but-set-variable] 125 | int g=0; | ^ FLAN_Clone.cpp:660:12: warning: variable 'sumP' set but not used [-Wunused-but-set-variable] 660 | double sumP; | ^ FLAN_Clone.cpp:761:12: warning: variable 'sumP' set but not used [-Wunused-but-set-variable] 761 | double sumP; | ^ 4 warnings generated. In file included from rcpp_flan_module.cpp:1: In file included from ./rcpp_flan_module.h:4: In file included from ./FLAN_Sim.h:28: In file included from ./FLAN_Clone.h:25: In file included from ./MATH_Function.h:5: In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:32: In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp.h:46: /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'FLAN_ExponentialClone' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] 31 | delete obj; | ^ /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer' requested here 54 | void Finalizer(T*) = standard_delete_finalizer, | ^ /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'FLAN_DiracClone' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] 31 | delete obj; | ^ /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer' requested here 54 | void Finalizer(T*) = standard_delete_finalizer, | ^ /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'FLAN_InhomogeneousClone' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] 31 | delete obj; | ^ /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer' requested here 54 | void Finalizer(T*) = standard_delete_finalizer, | ^ 3 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o flan.so FLAN_Clone.o FLAN_MutationModel.o FLAN_Sim.o MATH_Function.o init.o rcpp_flan_module.o -lgsl -lgslcblas -lm make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/flan/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/flan/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/flan/src' installing to /data/gannet/ripley/R/packages/tests-clang/flan.Rcheck/00LOCK-flan/00new/flan/libs ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (flan)