* installing *source* package ‘exactextractr’ ...
** package ‘exactextractr’ successfully unpacked and MD5 sums checked
** using staged installation
configure: exactextractr: 0.10.0
checking for geos-config... /usr/bin/geos-config
checking geos-config usability... yes
configure: GEOS version: 3.10.2
checking geos version at least 3.5.0... yes
checking compiling and building against geos_c... yes
configure: PKG_CXX: /usr/local/clang18/bin/clang++ -std=gnu++17
configure: PKG_CXXFLAGS: -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -I/usr/include
configure: PKG_LIBS: -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/lib64 -lgeos_c
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C++ compiler: ‘clang version 18.1.4’
using C++14
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/exactextractr/src'
/usr/local/clang18/bin/clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -I/usr/include -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c RcppExports.cpp -o RcppExports.o
/usr/local/clang18/bin/clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -I/usr/include -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c exact_extract.cpp -o exact_extract.o
/usr/local/clang18/bin/clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -I/usr/include -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c raster_utils.cpp -o raster_utils.o
/usr/local/clang18/bin/clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -I/usr/include -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c coverage_fraction.cpp -o coverage_fraction.o
/usr/local/clang18/bin/clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -I/usr/include -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c rasterize.cpp -o rasterize.o
/usr/local/clang18/bin/clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -I/usr/include -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c resample.cpp -o resample.o
/usr/local/clang18/bin/clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -I/usr/include -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c exactextract/src/measures.cpp -o exactextract/src/measures.o
/usr/local/clang18/bin/clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -I/usr/include -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c exactextract/src/box.cpp -o exactextract/src/box.o
/usr/local/clang18/bin/clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -I/usr/include -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c exactextract/src/cell.cpp -o exactextract/src/cell.o
/usr/local/clang18/bin/clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -I/usr/include -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c exactextract/src/coordinate.cpp -o exactextract/src/coordinate.o
/usr/local/clang18/bin/clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -I/usr/include -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c exactextract/src/floodfill.cpp -o exactextract/src/floodfill.o
/usr/local/clang18/bin/clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -I/usr/include -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c exactextract/src/geos_utils.cpp -o exactextract/src/geos_utils.o
/usr/local/clang18/bin/clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -I/usr/include -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c exactextract/src/grid.cpp -o exactextract/src/grid.o
/usr/local/clang18/bin/clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -I/usr/include -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c exactextract/src/perimeter_distance.cpp -o exactextract/src/perimeter_distance.o
/usr/local/clang18/bin/clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -I/usr/include -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c exactextract/src/raster_cell_intersection.cpp -o exactextract/src/raster_cell_intersection.o
/usr/local/clang18/bin/clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -I/usr/include -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c exactextract/src/side.cpp -o exactextract/src/side.o
/usr/local/clang18/bin/clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -I/usr/include -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c exactextract/src/traversal.cpp -o exactextract/src/traversal.o
/usr/local/clang18/bin/clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -I/usr/include -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c exactextract/src/traversal_areas.cpp -o exactextract/src/traversal_areas.o
/usr/local/clang18/bin/clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -I/usr/include -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c exactextract/src/weighted_quantiles.cpp -o exactextract/src/weighted_quantiles.o
/usr/local/clang18/bin/clang++ -std=gnu++14 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o exactextractr.so RcppExports.o exact_extract.o raster_utils.o coverage_fraction.o rasterize.o resample.o exactextract/src/measures.o exactextract/src/box.o exactextract/src/cell.o exactextract/src/coordinate.o exactextract/src/floodfill.o exactextract/src/geos_utils.o exactextract/src/grid.o exactextract/src/perimeter_distance.o exactextract/src/raster_cell_intersection.o exactextract/src/side.o exactextract/src/traversal.o exactextract/src/traversal_areas.o exactextract/src/weighted_quantiles.o -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/lib64 -lgeos_c
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/exactextractr/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/exactextractr/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/exactextractr/src'
installing to /data/gannet/ripley/R/packages/tests-clang/exactextractr.Rcheck/00LOCK-exactextractr/00new/exactextractr/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (exactextractr)