* installing *source* package ‘ecr’ ... ** package ‘ecr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘clang version 18.1.5’ using C++ compiler: ‘clang version 18.1.5’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/ecr/src' /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RcppExports.cpp -o RcppExports.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -DVARIANT=4 -c -o avl.o avl.c /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c computeHypervolume.c -o computeHypervolume.o computeHypervolume.c:18:52: warning: unused variable 'len_ref' [-Wunused-variable] 18 | EXTRACT_NUMERIC_VECTOR(r_ref_point, c_ref_point, len_ref); | ^~~~~~~ ./macros.h:16:19: note: expanded from macro 'EXTRACT_NUMERIC_VECTOR' 16 | const R_len_t LENGTH = length(S_EXP); | ^~~~~~ computeHypervolume.c:44:52: warning: unused variable 'n_ref_point' [-Wunused-variable] 44 | EXTRACT_NUMERIC_VECTOR(r_ref_point, c_ref_point, n_ref_point); | ^~~~~~~~~~~ ./macros.h:16:19: note: expanded from macro 'EXTRACT_NUMERIC_VECTOR' 16 | const R_len_t LENGTH = length(S_EXP); | ^~~~~~ 2 warnings generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c crowdingDistance.c -o crowdingDistance.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c dominance.c -o dominance.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c emoa.indicators.cpp -o emoa.indicators.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c eps_ind.c -o eps_ind.o eps_ind.c:112:52: warning: unused variable 'n_ref_objectives' [-Wunused-variable] 112 | EXTRACT_NUMERIC_MATRIX(ref_points, c_ref_points, n_ref_objectives, n_ref_points); | ^~~~~~~~~~~~~~~~ ./macros.h:11:19: note: expanded from macro 'EXTRACT_NUMERIC_MATRIX' 11 | const R_len_t N_ROW = nrows(S_EXP); \ | ^~~~~ 1 warning generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c helpers.c -o helpers.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -DVARIANT=4 -c -o hv.o hv.c /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c polynomialMutation.c -o polynomialMutation.o polynomialMutation.c:28:42: warning: unused variable 'c_lower_length' [-Wunused-variable] 28 | EXTRACT_NUMERIC_VECTOR(lower, c_lower, c_lower_length); | ^~~~~~~~~~~~~~ ./macros.h:16:19: note: expanded from macro 'EXTRACT_NUMERIC_VECTOR' 16 | const R_len_t LENGTH = length(S_EXP); | ^~~~~~ polynomialMutation.c:29:42: warning: unused variable 'c_upper_length' [-Wunused-variable] 29 | EXTRACT_NUMERIC_VECTOR(upper, c_upper, c_upper_length); | ^~~~~~~~~~~~~~ ./macros.h:16:19: note: expanded from macro 'EXTRACT_NUMERIC_VECTOR' 16 | const R_len_t LENGTH = length(S_EXP); | ^~~~~~ 2 warnings generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c r_ind.c -o r_ind.o r_ind.c:196:48: warning: unused variable 'k_weights' [-Wunused-variable] 196 | EXTRACT_NUMERIC_MATRIX(s_weights, weights, k_weights, n_weights); | ^~~~~~~~~ ./macros.h:11:19: note: expanded from macro 'EXTRACT_NUMERIC_MATRIX' 11 | const R_len_t N_ROW = nrows(S_EXP); \ | ^~~~~ r_ind.c:197:44: warning: unused variable 'n_ideal' [-Wunused-variable] 197 | EXTRACT_NUMERIC_VECTOR(s_ideal, ideal, n_ideal); | ^~~~~~~ ./macros.h:16:19: note: expanded from macro 'EXTRACT_NUMERIC_VECTOR' 16 | const R_len_t LENGTH = length(S_EXP); | ^~~~~~ r_ind.c:241:44: warning: unused variable 'n_ideal' [-Wunused-variable] 241 | EXTRACT_NUMERIC_VECTOR(s_ideal, ideal, n_ideal); | ^~~~~~~ ./macros.h:16:19: note: expanded from macro 'EXTRACT_NUMERIC_VECTOR' 16 | const R_len_t LENGTH = length(S_EXP); | ^~~~~~ r_ind.c:242:44: warning: unused variable 'n_nadir' [-Wunused-variable] 242 | EXTRACT_NUMERIC_VECTOR(s_nadir, nadir, n_nadir); | ^~~~~~~ ./macros.h:16:19: note: expanded from macro 'EXTRACT_NUMERIC_VECTOR' 16 | const R_len_t LENGTH = length(S_EXP); | ^~~~~~ 4 warnings generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c simulatedBinaryCrossover.c -o simulatedBinaryCrossover.o simulatedBinaryCrossover.c:46:49: warning: unused variable 'n' [-Wunused-variable] 46 | EXTRACT_NUMERIC_MATRIX(parents, c_parents, d, n); | ^ ./macros.h:12:19: note: expanded from macro 'EXTRACT_NUMERIC_MATRIX' 12 | const R_len_t N_COL = ncols(S_EXP); | ^~~~~ simulatedBinaryCrossover.c:49:42: warning: unused variable 'c_lower_length' [-Wunused-variable] 49 | EXTRACT_NUMERIC_VECTOR(lower, c_lower, c_lower_length); | ^~~~~~~~~~~~~~ ./macros.h:16:19: note: expanded from macro 'EXTRACT_NUMERIC_VECTOR' 16 | const R_len_t LENGTH = length(S_EXP); | ^~~~~~ simulatedBinaryCrossover.c:50:42: warning: unused variable 'c_upper_length' [-Wunused-variable] 50 | EXTRACT_NUMERIC_VECTOR(upper, c_upper, c_upper_length); | ^~~~~~~~~~~~~~ ./macros.h:16:19: note: expanded from macro 'EXTRACT_NUMERIC_VECTOR' 16 | const R_len_t LENGTH = length(S_EXP); | ^~~~~~ 3 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o ecr.so RcppExports.o avl.o computeHypervolume.o crowdingDistance.o dominance.o emoa.indicators.o eps_ind.o helpers.o hv.o polynomialMutation.o r_ind.o simulatedBinaryCrossover.o make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/ecr/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/ecr/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/ecr/src' installing to /data/gannet/ripley/R/packages/tests-clang/ecr.Rcheck/00LOCK-ecr/00new/ecr/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ecr)