* installing *source* package ‘deSolve’ ...
** package ‘deSolve’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 18.1.4’
using Fortran compiler: ‘flang-new version 18.1.4’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/deSolve/src'
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c DLLutil.c -o DLLutil.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c R_init_deSolve.c -o R_init_deSolve.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c brent.c -o brent.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c call_daspk.c -o call_daspk.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c call_euler.c -o call_euler.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c call_iteration.c -o call_iteration.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c call_lsoda.c -o call_lsoda.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c call_radau.c -o call_radau.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c call_rk4.c -o call_rk4.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c call_rkAuto.c -o call_rkAuto.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c call_rkFixed.c -o call_rkFixed.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c call_rkImplicit.c -o call_rkImplicit.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c call_zvode.c -o call_zvode.o
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c daux.f -o daux.o
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c ddaspk.f -o ddaspk.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c deSolve_utils.c -o deSolve_utils.o
./ddaspk.f:2631:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
        CALL DCOPY (NEQ, PHI(1,1), 1, Y, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:2584:7: previous reference to 'dcopy'
        CALL DCOPY (NEQ, Y, 1, PHI(1,1), 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:2632:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
        CALL DCOPY (NEQ, PHI(1,2), 1, YPRIME, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:2584:7: previous reference to 'dcopy'
        CALL DCOPY (NEQ, Y, 1, PHI(1,1), 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:3849:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes
        CALL DCOPY (NEQ, R, 1, DELTA, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:2584:7: previous reference to 'dcopy'
        CALL DCOPY (NEQ, Y, 1, PHI(1,1), 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:4036:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes
        CALL DCOPY (NEQ, YNEW, 1, Y, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:2584:7: previous reference to 'dcopy'
        CALL DCOPY (NEQ, Y, 1, PHI(1,1), 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:4037:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes
        CALL DCOPY (NEQ, YPNEW, 1, YPRIME, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:2584:7: previous reference to 'dcopy'
        CALL DCOPY (NEQ, Y, 1, PHI(1,1), 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:4984:9: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes
          CALL DCOPY (NEQ,  SAVR, 1, DELTA, 1)
          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:2584:7: previous reference to 'dcopy'
        CALL DCOPY (NEQ, Y, 1, PHI(1,1), 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:5109:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes
        CALL DCOPY (NEQ, DELTA, 1, SAVR, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:2584:7: previous reference to 'dcopy'
        CALL DCOPY (NEQ, Y, 1, PHI(1,1), 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:5169:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes
        CALL DCOPY (NEQ,  SAVR, 1, DELTA, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:2584:7: previous reference to 'dcopy'
        CALL DCOPY (NEQ, Y, 1, PHI(1,1), 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:5363:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes
        CALL DCOPY(NEQ, YNEW, 1, Y, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:2584:7: previous reference to 'dcopy'
        CALL DCOPY (NEQ, Y, 1, PHI(1,1), 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:5364:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes
        CALL DCOPY(NEQ, YPNEW, 1, YPRIME, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:2584:7: previous reference to 'dcopy'
        CALL DCOPY (NEQ, Y, 1, PHI(1,1), 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:5443:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes
        CALL DCOPY(NEQ, SAVR, 1, R, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:2584:7: previous reference to 'dcopy'
        CALL DCOPY (NEQ, Y, 1, PHI(1,1), 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:6028:25: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
        IF (NRSTS .GT. 0) CALL DCOPY (NEQ, WM(LDL), 1, WM(LR),1)
                          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:2584:7: previous reference to 'dcopy'
        CALL DCOPY (NEQ, Y, 1, PHI(1,1), 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:6245:7: warning: Reference to the procedure 'dscal' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
        CALL DSCAL (NEQ, TEM, V(1,1), 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:5444:7: previous reference to 'dscal'
        CALL DSCAL (NEQ, RSQRTN, WT, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:6286:13: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
              CALL DCOPY (NEQ, V(1,1), 1, DL, 1)
              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:2584:7: previous reference to 'dcopy'
        CALL DCOPY (NEQ, Y, 1, PHI(1,1), 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:6316:9: warning: Reference to the procedure 'dscal' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
          CALL DSCAL (NEQ, TEM, V(1,LL+1), 1)
          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:5444:7: previous reference to 'dscal'
        CALL DSCAL (NEQ, RSQRTN, WT, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:6338:13: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
              CALL DCOPY (NEQ, V(1,1), 1, DL, 1)
              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:2584:7: previous reference to 'dcopy'
        CALL DCOPY (NEQ, Y, 1, PHI(1,1), 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c dintdy2.f -o dintdy2.o
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c dlinpk.f -o dlinpk.o
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c dlsoder.f -o dlsoder.o
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c dsparsk.f -o dsparsk.o
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c dvode.f -o dvode.o
./dvode.f:433:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
        CALL DCOPY (N, Y, 1, RWORK(LYH), 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dvode.f:394:7: previous reference to 'dcopy'
        CALL DCOPY (N, RWORK(LWM), 1, RWORK(LSAVF), 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dvode.f:617:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes
        CALL DCOPY (N, RWORK(LYH), 1, Y, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dvode.f:394:7: previous reference to 'dcopy'
        CALL DCOPY (N, RWORK(LWM), 1, RWORK(LSAVF), 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dvode.f:701:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes
        CALL DCOPY (N, RWORK(LYH), 1, Y, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dvode.f:394:7: previous reference to 'dcopy'
        CALL DCOPY (N, RWORK(LWM), 1, RWORK(LSAVF), 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dvode.f:1094:7: warning: Reference to the procedure 'dscal' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
        CALL DSCAL (N, R, DKY, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^
./dvode.f:454:7: previous reference to 'dscal'
        CALL DSCAL (N, H0, RWORK(LF0), 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dvode.f:1420:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
        CALL DCOPY (N, ACOR, 1, YH(1,LMAX), 1 )
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dvode.f:394:7: previous reference to 'dcopy'
        CALL DCOPY (N, RWORK(LWM), 1, RWORK(LSAVF), 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dvode.f:1524:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
        CALL DCOPY (N, ACOR, 1, YH(1,LMAX), 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dvode.f:394:7: previous reference to 'dcopy'
        CALL DCOPY (N, RWORK(LWM), 1, RWORK(LSAVF), 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dvode.f:1551:7: warning: Reference to the procedure 'dscal' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
        CALL DSCAL (N, R, ACOR, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^
./dvode.f:454:7: previous reference to 'dscal'
        CALL DSCAL (N, H0, RWORK(LF0), 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dvode.f:1945:9: warning: Reference to the procedure 'daxpy' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
          CALL DAXPY (N, EL(J), YH(1,LP1), 1, YH(1,J), 1 )
          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dvode.f:1416:9: previous reference to 'daxpy'
          CALL DAXPY (N, EL(J), ACOR, 1, YH(1,J), 1 )
          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dvode.f:2091:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes
        CALL DCOPY (N, YH(1,1), 1, Y, 1 )
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dvode.f:394:7: previous reference to 'dcopy'
        CALL DCOPY (N, RWORK(LWM), 1, RWORK(LSAVF), 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dvode.f:2128:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
        CALL DCOPY (N, SAVF, 1, ACOR, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dvode.f:394:7: previous reference to 'dcopy'
        CALL DCOPY (N, RWORK(LWM), 1, RWORK(LSAVF), 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dvode.f:2144:9: warning: Reference to the procedure 'dscal' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
          CALL DSCAL (N, CSCALE, Y, 1)
          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dvode.f:454:7: previous reference to 'dscal'
        CALL DSCAL (N, H0, RWORK(LF0), 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dvode.f:2147:7: warning: Reference to the procedure 'daxpy' has an implicit interface that is distinct from another reference: incompatible dummy argument #5: incompatible dummy data object shapes
        CALL DAXPY (N, ONE, Y, 1, ACOR, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dvode.f:1416:9: previous reference to 'daxpy'
          CALL DAXPY (N, EL(J), ACOR, 1, YH(1,J), 1 )
          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c errmsg.f -o errmsg.o
./errmsg.f:19:9: warning: Reference to the procedure 'dblepr' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
          call dblepr(msg, -1, DBL, 2)
          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./errmsg.f:11:9: previous reference to 'dblepr'
          call dblepr(msg, -1, DBL, 1)
          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c ex_Aquaphy.c -o ex_Aquaphy.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c ex_CCL4model.c -o ex_CCL4model.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c ex_ChemicalDAE.c -o ex_ChemicalDAE.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c ex_SCOC.c -o ex_SCOC.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c forcings.c -o forcings.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c lags.c -o lags.o
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c opkda1.f -o opkda1.o
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c opkdmain.f -o opkdmain.o
./opkda1.f:887:2: warning: Compiler directive was ignored
  Cdir$ ivdep
   ^^^^^^^^^^
./opkda1.f:986:2: warning: Compiler directive was ignored
  Cdir$ ivdep
   ^^^^^^^^^^
./opkda1.f:1048:2: warning: Compiler directive was ignored
  Cdir$ ivdep
   ^^^^^^^^^^
./opkda1.f:4183:2: warning: Compiler directive was ignored
  CDIR$ IVDEP
   ^^^^^^^^^^
./opkda1.f:4304:2: warning: Compiler directive was ignored
  CDIR$ IVDEP
   ^^^^^^^^^^
./opkda1.f:4472:2: warning: Compiler directive was ignored
  CDIR$ IVDEP
   ^^^^^^^^^^
./opkda1.f:5222:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
        CALL DCOPY (NG, GX, 1, G1, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:5043:7: previous reference to 'dcopy'
        CALL DCOPY (NGC, GX, 1, G0, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:5229:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
        CALL DCOPY (NG, GX, 1, G1, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:5043:7: previous reference to 'dcopy'
        CALL DCOPY (NGC, GX, 1, G0, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:5234:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
        CALL DCOPY (NG, GX, 1, G0, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:5043:7: previous reference to 'dcopy'
        CALL DCOPY (NGC, GX, 1, G0, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:5244:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
        CALL DCOPY (NG, G1, 1, GX, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:5043:7: previous reference to 'dcopy'
        CALL DCOPY (NGC, GX, 1, G0, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:5259:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
        CALL DCOPY (NG, G1, 1, GX, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:5043:7: previous reference to 'dcopy'
        CALL DCOPY (NGC, GX, 1, G0, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:5268:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
   420  CALL DCOPY (NG, G1, 1, GX, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:5043:7: previous reference to 'dcopy'
        CALL DCOPY (NGC, GX, 1, G0, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:5540:2: warning: Compiler directive was ignored
  CDIR$ IVDEP
   ^^^^^^^^^^
./opkda1.f:5641:2: warning: Compiler directive was ignored
  CDIR$ IVDEP
   ^^^^^^^^^^
./opkda1.f:5703:2: warning: Compiler directive was ignored
  CDIR$ IVDEP
   ^^^^^^^^^^
./opkda1.f:5963:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes
        CALL DCOPY (N, X, 1, WM(LB), 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:5043:7: previous reference to 'dcopy'
        CALL DCOPY (NGC, GX, 1, G0, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:5987:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes
        CALL DCOPY (N, X, 1, WM(LB), 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:5043:7: previous reference to 'dcopy'
        CALL DCOPY (NGC, GX, 1, G0, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:6010:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes
        CALL DCOPY (N, X, 1, WM(LR), 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:5043:7: previous reference to 'dcopy'
        CALL DCOPY (NGC, GX, 1, G0, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:6030:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes
        CALL DCOPY (N, X, 1, WM(LR), 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:5043:7: previous reference to 'dcopy'
        CALL DCOPY (NGC, GX, 1, G0, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:6048:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes
        CALL DCOPY (N, X, 1, WM(LB), 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:5043:7: previous reference to 'dcopy'
        CALL DCOPY (NGC, GX, 1, G0, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:6185:7: warning: Reference to the procedure 'dscal' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
        CALL DSCAL (N, TEM, V(1,1), 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:5964:7: previous reference to 'dscal'
        CALL DSCAL (N, RSQRTN, EWT, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:6234:9: warning: Reference to the procedure 'dscal' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
          CALL DSCAL (N, TEM, V(1,LL+1), 1)
          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:5964:7: previous reference to 'dscal'
        CALL DSCAL (N, RSQRTN, EWT, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:6636:7: warning: Reference to the procedure 'dscal' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
        CALL DSCAL (N, TEM, V(1,1), 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:5964:7: previous reference to 'dscal'
        CALL DSCAL (N, RSQRTN, EWT, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:6673:13: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
              CALL DCOPY (N, V(1,1), 1, DL, 1)
              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:5043:7: previous reference to 'dcopy'
        CALL DCOPY (NGC, GX, 1, G0, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:6703:9: warning: Reference to the procedure 'dscal' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
          CALL DSCAL (N, TEM, V(1,LL+1), 1)
          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:5964:7: previous reference to 'dscal'
        CALL DSCAL (N, RSQRTN, EWT, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:6872:7: warning: Reference to the procedure 'daxpy' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
        CALL DAXPY (N, ALPHA, P, 1, X, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:6264:9: previous reference to 'daxpy'
          CALL DAXPY (N, B(I), V(1,I), 1, X, 1)
          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:6874:7: warning: Reference to the procedure 'daxpy' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
        CALL DAXPY (N, ALPHA, W, 1, R, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:6264:9: previous reference to 'daxpy'
          CALL DAXPY (N, B(I), V(1,I), 1, X, 1)
          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:7027:7: warning: Reference to the procedure 'daxpy' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
        CALL DAXPY (N, ALPHA, P, 1, X, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:6264:9: previous reference to 'daxpy'
          CALL DAXPY (N, B(I), V(1,I), 1, X, 1)
          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:7029:7: warning: Reference to the procedure 'daxpy' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
        CALL DAXPY (N, ALPHA, W, 1, R, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:6264:9: previous reference to 'daxpy'
          CALL DAXPY (N, B(I), V(1,I), 1, X, 1)
          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:7317:16: warning: Reference to the procedure 'daxpy' has an implicit interface that is distinct from another reference: incompatible dummy argument #5: incompatible dummy data object shapes
                 CALL DAXPY (N-K, T, A(K+1,K), 1, A(K+1,J), 1)
                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:6264:9: previous reference to 'daxpy'
          CALL DAXPY (N, B(I), V(1,I), 1, X, 1)
          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:7458:13: warning: Reference to the procedure 'daxpy' has an implicit interface that is distinct from another reference: incompatible dummy argument #5: incompatible dummy data object shapes
              CALL DAXPY (K-1, T, A(1,K), 1, B(1), 1)
              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:6264:9: previous reference to 'daxpy'
          CALL DAXPY (N, B(I), V(1,I), 1, X, 1)
          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:7686:13: warning: Reference to the procedure 'daxpy' has an implicit interface that is distinct from another reference: incompatible dummy argument #5: incompatible dummy data object shapes
              CALL DAXPY (K-1, T, A(1,K), 1, B(1), 1)
              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:6264:9: previous reference to 'daxpy'
          CALL DAXPY (N, B(I), V(1,I), 1, X, 1)
          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c radau5.f -o radau5.o
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c radau5a.f -o radau5a.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c rk_auto.c -o rk_auto.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c rk_fixed.c -o rk_fixed.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c rk_implicit.c -o rk_implicit.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c rk_util.c -o rk_util.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c rprintf.c -o rprintf.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c twoDmap.c -o twoDmap.o
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c zvode.f -o zvode.o
./zvode.f:1363:7: warning: Reference to the procedure 'zcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
        CALL ZCOPY (N, Y, 1, ZWORK(LYH), 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./zvode.f:1327:7: previous reference to 'zcopy'
        CALL ZCOPY (N, ZWORK(LWM), 1, ZWORK(LSAVF), 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./zvode.f:1540:7: warning: Reference to the procedure 'zcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes
        CALL ZCOPY (N, ZWORK(LYH), 1, Y, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./zvode.f:1327:7: previous reference to 'zcopy'
        CALL ZCOPY (N, ZWORK(LWM), 1, ZWORK(LSAVF), 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./zvode.f:1614:7: warning: Reference to the procedure 'zcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes
        CALL ZCOPY (N, ZWORK(LYH), 1, Y, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./zvode.f:1327:7: previous reference to 'zcopy'
        CALL ZCOPY (N, ZWORK(LWM), 1, ZWORK(LSAVF), 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./zvode.f:2318:7: warning: Reference to the procedure 'zcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
        CALL ZCOPY (N, ACOR, 1, YH(1,LMAX), 1 )
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./zvode.f:1327:7: previous reference to 'zcopy'
        CALL ZCOPY (N, ZWORK(LWM), 1, ZWORK(LSAVF), 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./zvode.f:2422:7: warning: Reference to the procedure 'zcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
        CALL ZCOPY (N, ACOR, 1, YH(1,LMAX), 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./zvode.f:1327:7: previous reference to 'zcopy'
        CALL ZCOPY (N, ZWORK(LWM), 1, ZWORK(LSAVF), 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./zvode.f:2985:7: warning: Reference to the procedure 'zcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes
        CALL ZCOPY (N, YH(1,1), 1, Y, 1 )
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./zvode.f:1327:7: previous reference to 'zcopy'
        CALL ZCOPY (N, ZWORK(LWM), 1, ZWORK(LSAVF), 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./zvode.f:3022:7: warning: Reference to the procedure 'zcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
        CALL ZCOPY (N, SAVF, 1, ACOR, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./zvode.f:1327:7: previous reference to 'zcopy'
        CALL ZCOPY (N, ZWORK(LWM), 1, ZWORK(LSAVF), 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./zvode.f:3207:23: warning: Reference to the procedure 'zcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
        IF (JSV .EQ. 1) CALL ZCOPY (LENP, WM, 1, WM(LOCJS), 1)
                        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./zvode.f:1327:7: previous reference to 'zcopy'
        CALL ZCOPY (N, ZWORK(LWM), 1, ZWORK(LSAVF), 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./zvode.f:3233:23: warning: Reference to the procedure 'zcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
        IF (JSV .EQ. 1) CALL ZCOPY (LENP, WM, 1, WM(LOCJS), 1)
                        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./zvode.f:1327:7: previous reference to 'zcopy'
        CALL ZCOPY (N, ZWORK(LWM), 1, ZWORK(LSAVF), 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./zvode.f:3239:7: warning: Reference to the procedure 'zcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes
        CALL ZCOPY (LENP, WM(LOCJS), 1, WM, 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./zvode.f:1327:7: previous reference to 'zcopy'
        CALL ZCOPY (N, ZWORK(LWM), 1, ZWORK(LSAVF), 1)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
/usr/local/clang18/bin/clang -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o deSolve.so DLLutil.o R_init_deSolve.o brent.o call_daspk.o call_euler.o call_iteration.o call_lsoda.o call_radau.o call_rk4.o call_rkAuto.o call_rkFixed.o call_rkImplicit.o call_zvode.o daux.o ddaspk.o deSolve_utils.o dintdy2.o dlinpk.o dlsoder.o dsparsk.o dvode.o errmsg.o ex_Aquaphy.o ex_CCL4model.o ex_ChemicalDAE.o ex_SCOC.o forcings.o lags.o opkda1.o opkdmain.o radau5.o radau5a.o rk_auto.o rk_fixed.o rk_implicit.o rk_util.o rprintf.o twoDmap.o zvode.o -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortran_main -lFortranRuntime -lFortranDecimal -lm -lFortran_main -lFortranRuntime -lFortranDecimal -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/deSolve/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/deSolve/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/deSolve/src'
installing to /data/gannet/ripley/R/packages/tests-clang/deSolve.Rcheck/00LOCK-deSolve/00new/deSolve/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘matplot’ in package ‘deSolve’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (deSolve)