* using log directory ‘/data/gannet/ripley/R/packages/tests-clang/dTBM.Rcheck’
* using R Under development (unstable) (2024-04-24 r86484)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    clang version 18.1.4
    flang-new version 18.1.4
* running under: Fedora Linux 36 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘dTBM/DESCRIPTION’ ... OK
* this is package ‘dTBM’ version ‘3.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘dTBM’ can be installed ... [19s/24s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-clang/dTBM-00install.html' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [22s/25s] OK
* checking Rd files ... NOTE
checkRd: (-1) angle_iteration.Rd:23: Lost braces; missing escapes or markup?
    23 | \code{z} {a list of vectors recording the estimated clustering assignment}
       |          ^
checkRd: (-1) angle_iteration.Rd:25: Lost braces; missing escapes or markup?
    25 | \code{s_deg} {logic variable, if "TRUE", degenerate estimated core tensor/matrix occurs during the iteration; if "FALSE", otherwise}
       |              ^
checkRd: (-1) dtbm.Rd:23: Lost braces
    23 | \code{z} {a list of vectors recording the refined clustering assignment with initialization \code{z0}}
       |          ^
checkRd: (-1) dtbm.Rd:25: Lost braces; missing escapes or markup?
    25 | \code{s_deg} {logic variable, if "TRUE", degenerate estimated core tensor/matrix occurs during the iteration; if "FALSE", otherwise}
       |              ^
checkRd: (-1) dtbm.Rd:27: Lost braces; missing escapes or markup?
    27 | \code{z0} { a list of vectors recording the initial clustering assignment }
       |           ^
checkRd: (-1) dtbm.Rd:29: Lost braces; missing escapes or markup?
    29 | \code{s0} { a list of vectors recording the index of degenerate entities with random clustering assignment in initialization}
       |           ^
checkRd: (-1) select_r.Rd:19: Lost braces; missing escapes or markup?
    19 | \code{r} {vector, the cluster number among the candidates with minimal BIC value}
       |          ^
checkRd: (-1) select_r.Rd:21: Lost braces; missing escapes or markup?
    21 | \code{bic} {vector, the BIC value for each candidiate}
       |            ^
checkRd: (-1) sim_dTBM.Rd:56: Lost braces
    56 | \code{Y} {array ( if \code{imat = FALSE} )/matrix ( if \code{imat = TRUE} ), simulated tensor/matrix observations with dimension \code{p}  }
       |          ^
checkRd: (-1) sim_dTBM.Rd:58: Lost braces
    58 | \code{X} {array ( if \code{imat = FALSE} )/matrix ( if \code{imat = TRUE} ), mean tensor/matrix of the observation, i.e., the expectation of \code{Y}}
       |          ^
checkRd: (-1) sim_dTBM.Rd:60: Lost braces
    60 | \code{S} {array ( if \code{imat = FALSE} )/matrix ( if \code{imat = TRUE} ), core tensor/matrix recording the block effects with dimension \code{r}}
       |          ^
checkRd: (-1) sim_dTBM.Rd:62: Lost braces; missing escapes or markup?
    62 | \code{theta} {a list of vectors, degree heterogeneity on each mode}
       |              ^
checkRd: (-1) sim_dTBM.Rd:64: Lost braces; missing escapes or markup?
    64 | \code{z} {a list of vectors, clustering assignment on each mode}
       |          ^
checkRd: (-1) wkmeans.Rd:19: Lost braces; missing escapes or markup?
    19 | \code{z0} { a list of vectors recording the estimated clustering assignment }
       |           ^
checkRd: (-1) wkmeans.Rd:21: Lost braces; missing escapes or markup?
    21 | \code{s0} { a list of vectors recording the index of degenerate entities with random clustering assignment}
       |           ^
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... NOTE
  Note: found 281 marked UTF-8 strings
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... [8s/12s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 2 NOTEs