* using log directory ‘/data/gannet/ripley/R/packages/tests-clang/cuda.ml.Rcheck’ * using R Under development (unstable) (2024-05-02 r86510) * using platform: x86_64-pc-linux-gnu * R was compiled by clang version 18.1.5 flang-new version 18.1.5 * running under: Fedora Linux 36 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘cuda.ml/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘cuda.ml’ version ‘0.3.2’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘cuda.ml’ can be installed ... [6m/11m] OK See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-clang/cuda.ml-00install.html' for details. * used C++ compiler: ‘clang version 18.1.5’ * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [3s/13s] OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... [3s/13s] OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... [3s/12s] OK * checking loading without being on the library search path ... [3s/12s] OK * checking whether startup messages can be suppressed ... [3s/12s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [23s/88s] OK * checking Rd files ... NOTE checkRd: (-1) cuML_major_version.Rd:5: Lost braces; missing escapes or markup? 5 | \title{Get the major version of the RAPIDS cuML shared library {cuda.ml} was linked | ^ checkRd: (-1) cuML_major_version.Rd:16: Lost braces; missing escapes or markup? 16 | Get the major version of the RAPIDS cuML shared library {cuda.ml} was linked | ^ checkRd: (-1) cuML_major_version.Rd:11: Lost braces; missing escapes or markup? 11 | The major version of the RAPIDS cuML shared library {cuda.ml} was | ^ checkRd: (-1) cuML_major_version.Rd:12: Lost braces; missing escapes or markup? 12 | linked to in a character vector, or \code{NA_character_} if {cuda.ml} was not | ^ checkRd: (-1) cuML_minor_version.Rd:5: Lost braces; missing escapes or markup? 5 | \title{Get the minor version of the RAPIDS cuML shared library {cuda.ml} was linked | ^ checkRd: (-1) cuML_minor_version.Rd:16: Lost braces; missing escapes or markup? 16 | Get the minor version of the RAPIDS cuML shared library {cuda.ml} was linked | ^ checkRd: (-1) cuML_minor_version.Rd:11: Lost braces; missing escapes or markup? 11 | The minor version of the RAPIDS cuML shared library {cuda.ml} was | ^ checkRd: (-1) cuML_minor_version.Rd:12: Lost braces; missing escapes or markup? 12 | linked to in a character vector, or \code{NA_character_} if {cuda.ml} was not | ^ checkRd: (-1) cuda_ml_agglomerative_clustering.Rd:22: Lost braces; missing escapes or markup? 22 | {"euclidean", "l1", "l2", "manhattan", "cosine"}. If connectivity is | ^ checkRd: (-1) cuda_ml_agglomerative_clustering.Rd:26: Lost braces; missing escapes or markup? 26 | of {"pairwise", "knn"}. Default: "pairwise". | ^ checkRd: (-1) cuda_ml_dbscan.Rd:22: Lost braces; missing escapes or markup? 22 | {"off", "critical", "error", "warn", "info", "debug", "trace"}. | ^ checkRd: (-1) cuda_ml_fil_enabled.Rd:6: Lost braces; missing escapes or markup? 6 | in the current installation of {cuda.ml}.} | ^ checkRd: (-1) cuda_ml_fil_enabled.Rd:19: Lost braces; missing escapes or markup? 19 | Treelite and then re-installing {cuda.ml}. | ^ checkRd: (-1) cuda_ml_fil_load_model.Rd:23: Lost braces; missing escapes or markup? 23 | {"classification", "regression"}.} | ^ checkRd: (-1) cuda_ml_fil_load_model.Rd:26: Lost braces; missing escapes or markup? 26 | ends with ".json" and \code{model_type} is "xgboost", then {cuda.ml} will | ^ checkRd: (-1) cuda_ml_kmeans.Rd:35: Lost braces; missing escapes or markup? 35 | {"off", "critical", "error", "warn", "info", "debug", "trace"}. | ^ checkRd: (-1) cuda_ml_knn.Rd:79: Lost braces; missing escapes or markup? 79 | {"brute", "ivfflat", "ivfpq", "ivfsq"} or a KNN algorithm specification | ^ checkRd: (-1) cuda_ml_knn.Rd:101-104: Lost braces 101 | \item{metric}{Distance metric to use. Must be one of {"euclidean", "l2", | ^ checkRd: (-1) cuda_ml_knn_algo_ivfsq.Rd:21-23: Lost braces 21 | \item{qtype}{Quantizer type. Must be one of {"QT_8bit", "QT_4bit", | ^ checkRd: (-1) cuda_ml_logistic_reg.Rd:95: Lost braces; missing escapes or markup? 95 | {"none", "l1", "l2", "elasticnet"}. | ^ checkRd: (-1) cuda_ml_ols.Rd:66: Lost braces; missing escapes or markup? 66 | \item{method}{Must be one of {"svd", "eig", "qr"}. | ^ checkRd: (-1) cuda_ml_pca.Rd:44: Lost braces; missing escapes or markup? 44 | {"off", "critical", "error", "warn", "info", "debug", "trace"}. | ^ checkRd: (-1) cuda_ml_rand_forest.Rd:152: Lost braces; missing escapes or markup? 152 | {"off", "critical", "error", "warn", "info", "debug", "trace"}. | ^ checkRd: (-1) cuda_ml_sgd.Rd:110: Lost braces; missing escapes or markup? 110 | \item{loss}{Loss function, must be one of {"squared_loss", "log", "hinge"}.} | ^ checkRd: (-1) cuda_ml_sgd.Rd:113: Lost braces; missing escapes or markup? 113 | {"none", "l1", "l2", "elasticnet"}. | ^ checkRd: (-1) cuda_ml_sgd.Rd:146: Lost braces; missing escapes or markup? 146 | \item{learning_rate}{Must be one of {"constant", "invscaling", "adaptive"}. | ^ checkRd: (-1) cuda_ml_svm.Rd:157: Lost braces; missing escapes or markup? 157 | {"off", "critical", "error", "warn", "info", "debug", "trace"}. | ^ checkRd: (-1) cuda_ml_tsne.Rd:39: Lost braces; missing escapes or markup? 39 | \item{method}{T-SNE method, must be one of {"barnes_hut", "fft", "exact"}. | ^ checkRd: (-1) cuda_ml_tsne.Rd:54: Lost braces; missing escapes or markup? 54 | \item{learning_rate_method}{Must be one of {"adaptive", "none"}. If | ^ checkRd: (-1) cuda_ml_tsne.Rd:97: Lost braces; missing escapes or markup? 97 | {"off", "critical", "error", "warn", "info", "debug", "trace"}. | ^ checkRd: (-1) cuda_ml_tsvd.Rd:40: Lost braces; missing escapes or markup? 40 | {"off", "critical", "error", "warn", "info", "debug", "trace"}. | ^ checkRd: (-1) cuda_ml_umap.Rd:51: Lost braces; missing escapes or markup? 51 | one of {"spectral", "random"}. Default: "spectral".} | ^ checkRd: (-1) cuda_ml_umap.Rd:91: Lost braces; missing escapes or markup? 91 | Must be one of {"categorical", "euclidean"}. Default: "categorical".} | ^ checkRd: (-1) cuda_ml_umap.Rd:109: Lost braces; missing escapes or markup? 109 | {"off", "critical", "error", "warn", "info", "debug", "trace"}. | ^ checkRd: (-1) has_cuML.Rd:5: Lost braces; missing escapes or markup? 5 | \title{Determine whether {cuda.ml} was linked to a valid version of the RAPIDS cuML | ^ checkRd: (-1) has_cuML.Rd:15: Lost braces; missing escapes or markup? 15 | Determine whether {cuda.ml} was linked to a valid version of the RAPIDS cuML | ^ checkRd: (-1) has_cuML.Rd:11: Lost braces; missing escapes or markup? 11 | A logical value indicating whether the current installation {cuda.ml} | ^ checkRd: (-1) predict.cuda_ml_rand_forest.Rd:30: Lost braces; missing escapes or markup? 30 | {"off", "critical", "error", "warn", "info", "debug", "trace"}. | ^ * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking examples ... [7s/28s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... OK Running ‘testthat.R’ * checking PDF version of manual ... [10s/41s] OK * checking HTML version of manual ... [3s/11s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 NOTE