* installing *source* package ‘coreCollection’ ... ** package ‘coreCollection’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘clang version 18.1.4’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/coreCollection/src' /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c CoreAlgorithm.cpp -o CoreAlgorithm.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c CoreAlgorithmRandomDescent.cpp -o CoreAlgorithmRandomDescent.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c CoreCollection.cpp -o CoreCollection.o CoreAlgorithmRandomDescent.cpp:10:7: warning: unused variable 'steps' [-Wunused-variable] 10 | int steps=0; | ^~~~~ 1 warning generated. CoreCollection.cpp:147:3: warning: delete called on non-final 'CoreMethod' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] 147 | delete m; | ^ CoreCollection.cpp:148:3: warning: delete called on non-final 'CoreAlgorithm' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] 148 | delete a; | ^ /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c CoreMethod.cpp -o CoreMethod.o 2 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c CoreMethodAccessionNearestEntry.cpp -o CoreMethodAccessionNearestEntry.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c CoreMethodEntryEntry.cpp -o CoreMethodEntryEntry.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c CoreMethodEntryNearestEntry.cpp -o CoreMethodEntryNearestEntry.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c CoreSelection.cpp -o CoreSelection.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RcppExports.cpp -o RcppExports.o CoreMethodEntryEntry.cpp:7:76: warning: unused variable 'l' [-Wunused-variable] 7 | int nl, n = selectedRandomPositions.length(), N = distanceMatrix.nrow(), l=c.length(); | ^ CoreMethodEntryEntry.cpp:73:10: warning: unused variable 'd' [-Wunused-variable] 73 | double d, nd, sumOfDistances = 0.0; | ^ CoreMethodEntryEntry.cpp:73:13: warning: unused variable 'nd' [-Wunused-variable] 73 | double d, nd, sumOfDistances = 0.0; | ^~ CoreMethodEntryNearestEntry.cpp:7:76: warning: unused variable 'l' [-Wunused-variable] 7 | int nl, n = selectedRandomPositions.length(), N = distanceMatrix.nrow(), l=c.length(); | ^ 3 warnings generated. CoreSelection.cpp:141:7: warning: unused variable 'N' [-Wunused-variable] 141 | int N = dist.nrow(); | ^ 1 warning generated. 1 warning generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o coreCollection.so CoreAlgorithm.o CoreAlgorithmRandomDescent.o CoreCollection.o CoreMethod.o CoreMethodAccessionNearestEntry.o CoreMethodEntryEntry.o CoreMethodEntryNearestEntry.o CoreSelection.o RcppExports.o make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/coreCollection/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/coreCollection/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/coreCollection/src' installing to /data/gannet/ripley/R/packages/tests-clang/coreCollection.Rcheck/00LOCK-coreCollection/00new/coreCollection/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (coreCollection)