* installing *source* package ‘cmfrec’ ...
** package ‘cmfrec’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 18.1.4’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/cmfrec/src'
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_FOR_R -DUSE_FC_LEN_T -DWRAPPED_GELSD -DAVOID_BLAS_SYR -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c Rwrapper.c -o Rwrapper.o
In file included from Rwrapper.c:78:
./cmfrec.h:144:13: warning: 'printf' macro redefined [-Wmacro-redefined]
144 | #define printf Rprintf
| ^
/usr/include/bits/stdio2.h:89:11: note: previous definition is here
89 | # define printf(...) \
| ^
1 warning generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_FOR_R -DUSE_FC_LEN_T -DWRAPPED_GELSD -DAVOID_BLAS_SYR -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c cblas_wrappers.c -o cblas_wrappers.o
In file included from cblas_wrappers.c:76:
./cmfrec.h:144:13: warning: 'printf' macro redefined [-Wmacro-redefined]
144 | #define printf Rprintf
| ^
/usr/include/bits/stdio2.h:89:11: note: previous definition is here
89 | # define printf(...) \
| ^
1 warning generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_FOR_R -DUSE_FC_LEN_T -DWRAPPED_GELSD -DAVOID_BLAS_SYR -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c collective.c -o collective.o
In file included from collective.c:76:
./cmfrec.h:144:13: warning: 'printf' macro redefined [-Wmacro-redefined]
144 | #define printf Rprintf
| ^
/usr/include/bits/stdio2.h:89:11: note: previous definition is here
89 | # define printf(...) \
| ^
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_FOR_R -DUSE_FC_LEN_T -DWRAPPED_GELSD -DAVOID_BLAS_SYR -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c common.c -o common.o
In file included from common.c:77:
./cmfrec.h:144:13: warning: 'printf' macro redefined [-Wmacro-redefined]
144 | #define printf Rprintf
| ^
/usr/include/bits/stdio2.h:89:11: note: previous definition is here
89 | # define printf(...) \
| ^
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_FOR_R -DUSE_FC_LEN_T -DWRAPPED_GELSD -DAVOID_BLAS_SYR -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c helpers.c -o helpers.o
In file included from helpers.c:76:
./cmfrec.h:144:13: warning: 'printf' macro redefined [-Wmacro-redefined]
144 | #define printf Rprintf
| ^
/usr/include/bits/stdio2.h:89:11: note: previous definition is here
89 | # define printf(...) \
| ^
1 warning generated.
1 warning generated.
1 warning generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_FOR_R -DUSE_FC_LEN_T -DWRAPPED_GELSD -DAVOID_BLAS_SYR -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c lbfgs.c -o lbfgs.o
In file included from lbfgs.c:89:
In file included from ./arithmetic_ansi.h:30:
./cmfrec.h:144:13: warning: 'printf' macro redefined [-Wmacro-redefined]
144 | #define printf Rprintf
| ^
/usr/include/bits/stdio2.h:89:11: note: previous definition is here
89 | # define printf(...) \
| ^
1 warning generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_FOR_R -DUSE_FC_LEN_T -DWRAPPED_GELSD -DAVOID_BLAS_SYR -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c offsets.c -o offsets.o
In file included from offsets.c:223:
./cmfrec.h:144:13: warning: 'printf' macro redefined [-Wmacro-redefined]
144 | #define printf Rprintf
| ^
/usr/include/bits/stdio2.h:89:11: note: previous definition is here
89 | # define printf(...) \
| ^
1 warning generated.
/usr/local/clang18/bin/clang -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o cmfrec.so Rwrapper.o cblas_wrappers.o collective.o common.o helpers.o lbfgs.o offsets.o -fopenmp -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortran_main -lFortranRuntime -lFortranDecimal -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/cmfrec/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/cmfrec/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/cmfrec/src'
installing to /data/gannet/ripley/R/packages/tests-clang/cmfrec.Rcheck/00LOCK-cmfrec/00new/cmfrec/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cmfrec)