* installing *source* package ‘clv’ ... ** package ‘clv’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘clang version 18.1.4’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/clv/src' /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c SD_SDbw_indicies.c -o SD_SDbw_indicies.o SD_SDbw_indicies.c:30:9: warning: unused variable 'j' [-Wunused-variable] 30 | int i, j, obj_num, dim_num, clust_num, protect_num; | ^ SD_SDbw_indicies.c:32:9: warning: unused variable 'dist' [-Wunused-variable] 32 | double dist; | ^~~~ SD_SDbw_indicies.c:38:10: warning: unused variable 'mean' [-Wunused-variable] 38 | double *mean, *variance; | ^~~~ SD_SDbw_indicies.c:42:10: warning: unused variable 'cluster_center' [-Wunused-variable] 42 | double *cluster_center, *cluster_variance; | ^~~~~~~~~~~~~~ SD_SDbw_indicies.c:80:31: warning: unused variable 'tmp' [-Wunused-variable] 80 | double sum_cls_var_norm = 0, tmp; | ^~~ SD_SDbw_indicies.c:147:12: warning: unused variable 'k' [-Wunused-variable] 147 | int i, j, k, clust_num, dim_num, protect_num = 0; | ^ SD_SDbw_indicies.c:159:26: warning: unused variable 'diff' [-Wunused-variable] 159 | double result = 0, tmp, diff, tmp_denominator; | ^~~~ 7 warnings generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c VCLDefines.c -o VCLDefines.o VCLDefines.c:307:17: warning: variable 'set_size2' set but not used [-Wunused-but-set-variable] 307 | int set_size1, set_size2; | ^ VCLDefines.c:372:10: warning: variable 'mean' set but not used [-Wunused-but-set-variable] 372 | double *mean = NULL; | ^ 2 warnings generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c cluster_scatter.c -o cluster_scatter.o cluster_scatter.c:53:7: warning: unused variable 'mean_sxp' [-Wunused-variable] 53 | SEXP mean_sxp; | ^~~~~~~~ cluster_scatter.c:311:21: warning: unused variable 'dim_num' [-Wunused-variable] 311 | int i, j, obj_num, dim_num, clust_num, protect_num; | ^~~~~~~ 2 warnings generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c cluster_stability.c -o cluster_stability.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c connectivity.c -o connectivity.o connectivity.c:16:30: warning: unused variable 'clust_num' [-Wunused-variable] 16 | int i, j, obj_num, dim_num, clust_num, protect_num; | ^~~~~~~~~ connectivity.c:132:21: warning: unused variable 'dim_num' [-Wunused-variable] 132 | int i, j, obj_num, dim_num, clust_num, protect_num; | ^~~~~~~ connectivity.c:132:30: warning: unused variable 'clust_num' [-Wunused-variable] 132 | int i, j, obj_num, dim_num, clust_num, protect_num; | ^~~~~~~~~ 3 warnings generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c dot_product.c -o dot_product.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c matrix_scatter_measures.c -o matrix_scatter_measures.o matrix_scatter_measures.c:9:13: warning: unused variable 'pos' [-Wunused-variable] 9 | int i,j,k, pos; | ^~~ matrix_scatter_measures.c:33:6: warning: unused variable 'cluster_num' [-Wunused-variable] 33 | int cluster_num; | ^~~~~~~~~~~ matrix_scatter_measures.c:54:13: warning: unused variable 'pos' [-Wunused-variable] 54 | int i,j,k, pos; | ^~~ matrix_scatter_measures.c:78:6: warning: unused variable 'cluster_num' [-Wunused-variable] 78 | int cluster_num; | ^~~~~~~~~~~ 4 warnings generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c optimal_assignment.c -o optimal_assignment.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c standard_external_measures.c -o standard_external_measures.o /usr/local/clang18/bin/clang -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o clv.so SD_SDbw_indicies.o VCLDefines.o cluster_scatter.o cluster_stability.o connectivity.o dot_product.o matrix_scatter_measures.o optimal_assignment.o standard_external_measures.o make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/clv/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/clv/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/clv/src' installing to /data/gannet/ripley/R/packages/tests-clang/clv.Rcheck/00LOCK-clv/00new/clv/libs ** R ** demo ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (clv)