• using R Under development (unstable) (2016-09-25 r71357)
• using platform: x86_64-pc-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘cggd/DESCRIPTION’ ... OK
• this is package ‘cggd’ version ‘0.8’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... NOTE
  Found the following hidden files and directories:
    .project
  These were most likely included in error. See section ‘Package
  structure’ in the ‘Writing R Extensions’ manual.
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘cggd’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... NOTE
  Non-standard file/directory found at top level:
    ‘try1.r’
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... NOTE
  Found the following apparent S3 methods exported but not registered:
    plot.cggd predict.cggd
  See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
  manual.
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  get.switch.time: warning in uniroot(f = switch.func, int =
    c(last_boundary, boundary), lower = last_boundary, upper = boundary,
    maxiter = 1000, tol = tol, e): partial argument match of 'int' to
    'interval'
  plot.cggd: warning in axis(4, at = b[nrow(b), ], label = paste(cnums),
    cex = 0.8, adj = 0): partial argument match of 'label' to 'labels'
  plot.cggd: no visible global function definition for ‘gen.beta’
  plotCVcggd: no visible binding for global variable ‘cv’
  plotCVcggd: no visible binding for global variable ‘cv.error’
  predict.cggd: no visible binding for global variable ‘max.tk’
  predict.cggd: no visible global function definition for ‘gen.beta’
  Undefined global functions or variables:
    cv cv.error gen.beta max.tk
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... NOTE
  Rd file 'cggd-internal.Rd':
    \usage lines wider than 90 characters:
       get.switch.time(switch.func,e, boundary=0,terminate_value=1e15,tol = .Machine$double.eps^0.5, fctr=1e8, TRACE=FALSE)
       cggd.mgd.one.step(x, y, a.set, beta_init, t1 = 1, alpha1 = 0, alpha2 = 0, w = 1, tau = 1, tautil = -1, eps = -1, TRACE=FALSE, fctr=1 ... [TRUNCATED]
       cggd.trr.one.step(x, y, a.set, beta_init, t1 = 1, t0 = 1, tau = 1, tautil = -1, eps = -1, fctr=1e8)
  
  Rd file 'plot.cggd.Rd':
    \usage lines wider than 90 characters:
       plot.cggd(x, steps=5, breaks = TRUE, first_k=1,last_k=Inf, xvar=c("step","t"),omit.zeros = TRUE, eps = 1e-10, ...)
  
  These lines will be truncated in the PDF manual.
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... NOTE
  S3 methods shown with full name in documentation object 'plot.cggd':
    ‘plot.cggd’
  
  The \usage entries for S3 methods should use the \method markup and not
  their full name.
  See chapter ‘Writing R documentation files’ in the ‘Writing R
  Extensions’ manual.
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [22s/25s] OK
• checking PDF version of manual ... OK
• DONE

Status: 6 NOTEs