- using R Under development (unstable) (2018-04-20 r74620)
- using platform: x86_64-pc-linux-gnu (64-bit)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘cggd/DESCRIPTION’ ... OK
- this is package ‘cggd’ version ‘0.8’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
.project
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘cggd’ can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... NOTE
Non-standard file/directory found at top level:
‘try1.r’
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... NOTE
Found the following apparent S3 methods exported but not registered:
plot.cggd predict.cggd
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... NOTE
get.switch.time: warning in uniroot(f = switch.func, int =
c(last_boundary, boundary), lower = last_boundary, upper = boundary,
maxiter = 1000, tol = tol, e): partial argument match of 'int' to
'interval'
plot.cggd: warning in axis(4, at = b[nrow(b), ], label = paste(cnums),
cex = 0.8, adj = 0): partial argument match of 'label' to 'labels'
plot.cggd: no visible global function definition for ‘gen.beta’
plotCVcggd: no visible binding for global variable ‘cv’
plotCVcggd: no visible binding for global variable ‘cv.error’
predict.cggd: no visible binding for global variable ‘max.tk’
predict.cggd: no visible global function definition for ‘gen.beta’
Undefined global functions or variables:
cv cv.error gen.beta max.tk
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... NOTE
Rd file 'cggd-internal.Rd':
\usage lines wider than 90 characters:
get.switch.time(switch.func,e, boundary=0,terminate_value=1e15,tol = .Machine$double.eps^0.5, fctr=1e8, TRACE=FALSE)
cggd.mgd.one.step(x, y, a.set, beta_init, t1 = 1, alpha1 = 0, alpha2 = 0, w = 1, tau = 1, tautil = -1, eps = -1, TRACE=FALSE, fctr=1 ... [TRUNCATED]
cggd.trr.one.step(x, y, a.set, beta_init, t1 = 1, t0 = 1, tau = 1, tautil = -1, eps = -1, fctr=1e8)
Rd file 'plot.cggd.Rd':
\usage lines wider than 90 characters:
plot.cggd(x, steps=5, breaks = TRUE, first_k=1,last_k=Inf, xvar=c("step","t"),omit.zeros = TRUE, eps = 1e-10, ...)
These lines will be truncated in the PDF manual.
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'plot.cggd':
‘plot.cggd’
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking examples ... [13s/15s] OK
- checking PDF version of manual ... OK
- DONE
Status: 6 NOTEs