* installing *source* package ‘bsamGP’ ...
** package ‘bsamGP’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 18.1.4’
using Fortran compiler: ‘flang-new version 18.1.4’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/bsamGP/src'
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c registerDynamicSymbol.c -o registerDynamicSymbol.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c ToolsRfunc.c -o ToolsRfunc.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c ToolsRfunf.f90 -o ToolsRfunf.o
./ToolsRfunf.f90:362:1: warning: Reference to the procedure 'dpotrf' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
call dpotrf('U',d,covi,d,ok)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ToolsRfunf.f90:64:3: previous reference to 'dpotrf'
call dpotrf('L',p,L,p,ok)
^^^^^^^^^^^^^^^^^^^^^^^^^
./ToolsRfunf.f90:405:3: warning: Reference to the procedure 'dpotrf' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
call dpotrf('U',p,Ri,p,ok)
^^^^^^^^^^^^^^^^^^^^^^^^^^
./ToolsRfunf.f90:64:3: previous reference to 'dpotrf'
call dpotrf('L',p,L,p,ok)
^^^^^^^^^^^^^^^^^^^^^^^^^
./ToolsRfunf.f90:406:3: warning: Reference to the procedure 'dpotri' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
call dpotri('U',p,Ri,p,ok)
^^^^^^^^^^^^^^^^^^^^^^^^^^
./ToolsRfunf.f90:369:1: previous reference to 'dpotri'
call dpotri('U',d,covi,d,ok)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c bsamTools.f90 -o bsamTools.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c gbsamTools.f90 -o gbsamTools.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c blreg.f90 -o blreg.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c bqreg.f90 -o bqreg.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c bqreggetlogg.f90 -o bqreggetlogg.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c bsad.f90 -o bsad.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c bsaqam.f90 -o bsaqam.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c bsaqamdpscale.f90 -o bsaqamdpscale.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c bsaram.f90 -o bsaram.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c bsaramdplocationscale.f90 -o bsaramdplocationscale.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c bsaramdpscale.f90 -o bsaramdpscale.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c bsaramgetlogg.f90 -o bsaramgetlogg.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c gbglmgetlogg.f90 -o gbglmgetlogg.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c gblogitKS.f90 -o gblogitKS.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c gblogitMH.f90 -o gblogitMH.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c gbnegbinMH.f90 -o gbnegbinMH.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c gbpoisgammMH.f90 -o gbpoisgammMH.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c gbpoisMH.f90 -o gbpoisMH.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c gbprobitAC.f90 -o gbprobitAC.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c gbsaramgetlogg.f90 -o gbsaramgetlogg.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c gbsarlogitKS.f90 -o gbsarlogitKS.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c gbsarlogitMH.f90 -o gbsarlogitMH.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c gbsarnegbinMH.f90 -o gbsarnegbinMH.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c gbsarpoisgammMH.f90 -o gbsarpoisgammMH.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c gbsarpoisMH.f90 -o gbsarpoisMH.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c gbsarprobitAC.f90 -o gbsarprobitAC.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c predictgbsam.f90 -o predictgbsam.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c predictbsam.f90 -o predictbsam.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c bsarbig.f90 -o bsarbig.o
/usr/local/clang18/bin/clang -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o bsamGP.so registerDynamicSymbol.o ToolsRfunc.o ToolsRfunf.o bsamTools.o gbsamTools.o blreg.o bqreg.o bqreggetlogg.o bsad.o bsaqam.o bsaqamdpscale.o bsaram.o bsaramdplocationscale.o bsaramdpscale.o bsaramgetlogg.o gbglmgetlogg.o gblogitKS.o gblogitMH.o gbnegbinMH.o gbpoisgammMH.o gbpoisMH.o gbprobitAC.o gbsaramgetlogg.o gbsarlogitKS.o gbsarlogitMH.o gbsarnegbinMH.o gbsarpoisgammMH.o gbsarpoisMH.o gbsarprobitAC.o predictgbsam.o predictbsam.o bsarbig.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortran_main -lFortranRuntime -lFortranDecimal -lm -lm -lFortran_main -lFortranRuntime -lFortranDecimal -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/bsamGP/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/bsamGP/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/bsamGP/src'
installing to /data/gannet/ripley/R/packages/tests-clang/bsamGP.Rcheck/00LOCK-bsamGP/00new/bsamGP/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bsamGP)