* installing *source* package ‘bmstdr’ ... ** package ‘bmstdr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘clang version 18.1.4’ using C++17 make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/bmstdr/src' /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"../inst/include" -I"/data/gannet/ripley/R/test-clang/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/rstan/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RcppExports.cpp -o RcppExports.o In file included from RcppExports.cpp:4: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from RcppExports.cpp:4: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from RcppExports.cpp:4: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from RcppExports.cpp:4: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 5 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"../inst/include" -I"/data/gannet/ripley/R/test-clang/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/rstan/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c crps.cpp -o crps.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"../inst/include" -I"/data/gannet/ripley/R/test-clang/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/rstan/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c stanExports_gp_marginal.cc -o stanExports_gp_marginal.o In file included from stanExports_gp_marginal.cc:5: In file included from ./stanExports_gp_marginal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from stanExports_gp_marginal.cc:5: In file included from ./stanExports_gp_marginal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from stanExports_gp_marginal.cc:5: In file included from ./stanExports_gp_marginal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:21: /data/gannet/ripley/R/test-clang/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] 47 | virtual std::streamsize xsputn(const char_type* s, int n) { | ^ /usr/local/clang18/bin/../include/c++/v1/streambuf:276:22: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int') 276 | virtual streamsize xsputn(const char_type* __s, streamsize __n); | ^ In file included from stanExports_gp_marginal.cc:5: In file included from ./stanExports_gp_marginal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:21: /data/gannet/ripley/R/test-clang/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] 70 | virtual std::streamsize xsputn(const char_type* s, int n) { | ^ /usr/local/clang18/bin/../include/c++/v1/streambuf:276:22: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int') 276 | virtual streamsize xsputn(const char_type* __s, streamsize __n); | ^ In file included from stanExports_gp_marginal.cc:5: In file included from ./stanExports_gp_marginal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:31: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from stanExports_gp_marginal.cc:5: In file included from ./stanExports_gp_marginal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:31: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ In file included from stanExports_gp_marginal.cc:5: In file included from ./stanExports_gp_marginal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:14: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun.hpp:35: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8: /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags] 57 | struct ops_partials_edge> { | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here? 45 | class ops_partials_edge; | ^~~~~ | struct In file included from stanExports_gp_marginal.cc:5: In file included from ./stanExports_gp_marginal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:34: /data/gannet/ripley/R/test-clang/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token] 166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_gp_marginal.cc:5: In file included from ./stanExports_gp_marginal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21: /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token] 125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_gp_marginal.cc:5: In file included from ./stanExports_gp_marginal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:131: /data/gannet/ripley/R/test-clang/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token] 49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_gp_marginal.cc:5: In file included from ./stanExports_gp_marginal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:39: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/linear_algebra.hpp:20: /data/gannet/ripley/R/test-clang/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token] 75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_gp_marginal.cc:5: In file included from ./stanExports_gp_marginal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:40: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/unscale.hpp:28: /data/gannet/ripley/R/test-clang/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token] 139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_gp_marginal.cc:5: In file included from ./stanExports_gp_marginal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20: /data/gannet/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token] 120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_gp_marginal.cc:5: In file included from ./stanExports_gp_marginal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:21: /data/gannet/ripley/R/test-clang/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token] 99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_gp_marginal.cc:5: In file included from ./stanExports_gp_marginal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token] 495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_gp_marginal.cc:5: In file included from ./stanExports_gp_marginal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] 1252 | int ret = stan::services::error_codes::CONFIG; | ^ In file included from stanExports_gp_marginal.cc:5: ./stanExports_gp_marginal.h:717:11: warning: variable 'pos__' set but not used [-Wunused-but-set-variable] 717 | int pos__ = std::numeric_limits::min(); | ^ In file included from stanExports_gp_marginal.cc:5: In file included from ./stanExports_gp_marginal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:14: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun.hpp:46: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/choose.hpp:7: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/math/special_functions/binomial.hpp:15: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/math/special_functions/beta.hpp:1721: /data/gannet/ripley/R/test-clang/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable] 29 | const T x_extrema = 1 / (1 + a); | ^~~~~~~~~ /data/gannet/ripley/R/test-clang/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder::temme_root_finder' requested here 304 | temme_root_finder(-lu, alpha), x, lower, upper, policies::digits() / 2); | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse, boost::math::policies::promote_float, boost::math::policies::promote_double>>' requested here 615 | x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol); | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp, boost::math::policies::promote_float, boost::math::policies::promote_double>>' requested here 992 | rx = detail::ibeta_inv_imp( | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv, boost::math::policies::pole_error, boost::math::policies::promote_double, boost::math::policies::digits2<>>>' requested here 1023 | return ibeta_inv(a, b, p, static_cast(nullptr), pol); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv, boost::math::policies::pole_error, boost::math::policies::promote_double, boost::math::policies::digits2<>>>' requested here 32 | return boost::math::ibeta_inv(a, b, p, boost_policy_t<>()); | ^ In file included from stanExports_gp_marginal.cc:5: ./stanExports_gp_marginal.h:469:26: warning: unused variable 'u' [-Wunused-variable] 469 | local_scalar_t__ u = DUMMY_VAR__; | ^ ./stanExports_gp_marginal.h:921:12: note: in instantiation of function template specialization 'model_gp_marginal_namespace::model_gp_marginal::log_prob_impl, std::vector, nullptr, nullptr>' requested here 921 | return log_prob_impl(params_r, params_i, pstream); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:129:33: note: in instantiation of function template specialization 'model_gp_marginal_namespace::model_gp_marginal::log_prob' requested here 129 | log_prob = model.template log_prob(unconstrained, | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_gp_marginal.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_gp_marginal.cc:5: ./stanExports_gp_marginal.h:469:26: warning: unused variable 'u' [-Wunused-variable] 469 | local_scalar_t__ u = DUMMY_VAR__; | ^ ./stanExports_gp_marginal.h:921:12: note: in instantiation of function template specialization 'model_gp_marginal_namespace::model_gp_marginal::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 921 | return log_prob_impl(params_r, params_i, pstream); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: in instantiation of function template specialization 'model_gp_marginal_namespace::model_gp_marginal::log_prob>' requested here 40 | var adLogProb = model.template log_prob( | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:167:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 167 | log_prob = stan::model::log_prob_grad( | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_gp_marginal.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_gp_marginal.cc:5: ./stanExports_gp_marginal.h:469:26: warning: unused variable 'u' [-Wunused-variable] 469 | local_scalar_t__ u = DUMMY_VAR__; | ^ ./stanExports_gp_marginal.h:921:12: note: in instantiation of function template specialization 'model_gp_marginal_namespace::model_gp_marginal::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 921 | return log_prob_impl(params_r, params_i, pstream); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: in instantiation of function template specialization 'model_gp_marginal_namespace::model_gp_marginal::log_prob>' requested here 40 | var adLogProb = model.template log_prob( | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:167:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 167 | log_prob = stan::model::log_prob_grad( | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/optimize/newton.hpp:50:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 50 | std::vector cont_vector = util::initialize( | ^ /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:502:35: note: in instantiation of function template specialization 'stan::services::optimize::newton' requested here 502 | = stan::services::optimize::newton(model, *init_context_ptr, | ^ /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_gp_marginal.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_gp_marginal.cc:5: ./stanExports_gp_marginal.h:469:26: warning: unused variable 'u' [-Wunused-variable] 469 | local_scalar_t__ u = DUMMY_VAR__; | ^ ./stanExports_gp_marginal.h:921:12: note: in instantiation of function template specialization 'model_gp_marginal_namespace::model_gp_marginal::log_prob_impl, std::vector, nullptr, nullptr>' requested here 921 | return log_prob_impl(params_r, params_i, pstream); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:25: note: in instantiation of function template specialization 'model_gp_marginal_namespace::model_gp_marginal::log_prob' requested here 56 | lp = model.template log_prob(cont_vector, disc_vector, | ^ /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:502:35: note: in instantiation of function template specialization 'stan::services::optimize::newton' requested here 502 | = stan::services::optimize::newton(model, *init_context_ptr, | ^ /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_gp_marginal.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_gp_marginal.cc:5: ./stanExports_gp_marginal.h:469:26: warning: unused variable 'u' [-Wunused-variable] 469 | local_scalar_t__ u = DUMMY_VAR__; | ^ ./stanExports_gp_marginal.h:916:12: note: in instantiation of function template specialization 'model_gp_marginal_namespace::model_gp_marginal::log_prob_impl, -1, 1>, Eigen::Matrix, nullptr, nullptr>' requested here 916 | return log_prob_impl(params_r, params_i, pstream); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_functional.hpp:21:27: note: in instantiation of function template specialization 'model_gp_marginal_namespace::model_gp_marginal::log_prob>' requested here 21 | return model.template log_prob( | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/functor/gradient.hpp:51:16: note: in instantiation of function template specialization 'stan::model::model_functional::operator()>' requested here 51 | var fx_var = f(x_var); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/gradient.hpp:27:17: note: in instantiation of function template specialization 'stan::math::gradient>' requested here 27 | stan::math::gradient(model_functional(model, &ss), x, f, grad_f); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/base_hamiltonian.hpp:63:20: note: in instantiation of function template specialization 'stan::model::gradient' requested here 63 | stan::model::gradient(model_, z.q, z.V, z.g, logger); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/mcmc/hmc/integrators/expl_leapfrog.hpp:25:17: note: (skipping 5 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) 25 | hamiltonian.update_potential_gradient(z, logger); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e.hpp:74:54: note: in instantiation of member function 'stan::mcmc::dense_e_nuts, boost::random::linear_congruential_engine>>::dense_e_nuts' requested here 74 | stan::mcmc::dense_e_nuts sampler(model, rng); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e.hpp:128:10: note: in instantiation of function template specialization 'stan::services::sample::hmc_nuts_dense_e' requested here 128 | return hmc_nuts_dense_e(model, init, unit_e_metric, random_seed, chain, | ^ /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:621:13: note: in instantiation of function template specialization 'stan::services::sample::hmc_nuts_dense_e' requested here 621 | ::hmc_nuts_dense_e(model, *init_context_ptr, | ^ /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_gp_marginal.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_gp_marginal.cc:5: ./stanExports_gp_marginal.h:469:26: warning: unused variable 'u' [-Wunused-variable] 469 | local_scalar_t__ u = DUMMY_VAR__; | ^ ./stanExports_gp_marginal.h:916:12: note: in instantiation of function template specialization 'model_gp_marginal_namespace::model_gp_marginal::log_prob_impl, Eigen::Matrix, nullptr, nullptr>' requested here 916 | return log_prob_impl(params_r, params_i, pstream); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/variational/advi.hpp:514:31: note: in instantiation of function template specialization 'model_gp_marginal_namespace::model_gp_marginal::log_prob' requested here 514 | log_p = model_.template log_prob(cont_params_, &msg2); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/experimental/advi/fullrank.hpp:82:12: note: in instantiation of member function 'stan::variational::advi, boost::random::linear_congruential_engine>>::run' requested here 82 | cmd_advi.run(eta, adapt_engaged, adapt_iterations, tol_rel_obj, | ^ /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:890:9: note: in instantiation of function template specialization 'stan::services::experimental::advi::fullrank' requested here 890 | ::fullrank(model, *init_context_ptr, | ^ /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_gp_marginal.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_gp_marginal.cc:5: ./stanExports_gp_marginal.h:469:26: warning: unused variable 'u' [-Wunused-variable] 469 | local_scalar_t__ u = DUMMY_VAR__; | ^ ./stanExports_gp_marginal.h:916:12: note: in instantiation of function template specialization 'model_gp_marginal_namespace::model_gp_marginal::log_prob_impl, Eigen::Matrix, nullptr, nullptr>' requested here 916 | return log_prob_impl(params_r, params_i, pstream); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_base_crtp.hpp:93:50: note: in instantiation of function template specialization 'model_gp_marginal_namespace::model_gp_marginal::log_prob' requested here 93 | return static_cast(this)->template log_prob( | ^ ./stanExports_gp_marginal.h:149:3: note: in instantiation of member function 'stan::model::model_base_crtp::log_prob' requested here 149 | ~model_gp_marginal() {} | ^ ./stanExports_gp_marginal.h:469:26: warning: unused variable 'u' [-Wunused-variable] 469 | local_scalar_t__ u = DUMMY_VAR__; | ^ ./stanExports_gp_marginal.h:916:12: note: in instantiation of function template specialization 'model_gp_marginal_namespace::model_gp_marginal::log_prob_impl, -1, 1>, Eigen::Matrix, nullptr, nullptr>' requested here 916 | return log_prob_impl(params_r, params_i, pstream); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_base_crtp.hpp:98:50: note: in instantiation of function template specialization 'model_gp_marginal_namespace::model_gp_marginal::log_prob>' requested here 98 | return static_cast(this)->template log_prob(theta, | ^ ./stanExports_gp_marginal.h:149:3: note: in instantiation of member function 'stan::model::model_base_crtp::log_prob' requested here 149 | ~model_gp_marginal() {} | ^ ./stanExports_gp_marginal.h:469:26: warning: unused variable 'u' [-Wunused-variable] 469 | local_scalar_t__ u = DUMMY_VAR__; | ^ ./stanExports_gp_marginal.h:916:12: note: in instantiation of function template specialization 'model_gp_marginal_namespace::model_gp_marginal::log_prob_impl, -1, 1>, Eigen::Matrix, nullptr, nullptr>' requested here 916 | return log_prob_impl(params_r, params_i, pstream); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_base_crtp.hpp:109:50: note: in instantiation of function template specialization 'model_gp_marginal_namespace::model_gp_marginal::log_prob>' requested here 109 | return static_cast(this)->template log_prob(theta, | ^ ./stanExports_gp_marginal.h:149:3: note: in instantiation of member function 'stan::model::model_base_crtp::log_prob_jacobian' requested here 149 | ~model_gp_marginal() {} | ^ ./stanExports_gp_marginal.h:469:26: warning: unused variable 'u' [-Wunused-variable] 469 | local_scalar_t__ u = DUMMY_VAR__; | ^ ./stanExports_gp_marginal.h:916:12: note: in instantiation of function template specialization 'model_gp_marginal_namespace::model_gp_marginal::log_prob_impl, Eigen::Matrix, nullptr, nullptr>' requested here 916 | return log_prob_impl(params_r, params_i, pstream); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_base_crtp.hpp:115:50: note: in instantiation of function template specialization 'model_gp_marginal_namespace::model_gp_marginal::log_prob' requested here 115 | return static_cast(this)->template log_prob(theta, | ^ ./stanExports_gp_marginal.h:149:3: note: in instantiation of member function 'stan::model::model_base_crtp::log_prob_propto' requested here 149 | ~model_gp_marginal() {} | ^ ./stanExports_gp_marginal.h:469:26: warning: unused variable 'u' [-Wunused-variable] 469 | local_scalar_t__ u = DUMMY_VAR__; | ^ ./stanExports_gp_marginal.h:916:12: note: in instantiation of function template specialization 'model_gp_marginal_namespace::model_gp_marginal::log_prob_impl, -1, 1>, Eigen::Matrix, nullptr, nullptr>' requested here 916 | return log_prob_impl(params_r, params_i, pstream); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_base_crtp.hpp:120:50: note: in instantiation of function template specialization 'model_gp_marginal_namespace::model_gp_marginal::log_prob>' requested here 120 | return static_cast(this)->template log_prob(theta, | ^ ./stanExports_gp_marginal.h:149:3: note: in instantiation of member function 'stan::model::model_base_crtp::log_prob_propto' requested here 149 | ~model_gp_marginal() {} | ^ ./stanExports_gp_marginal.h:469:26: warning: unused variable 'u' [-Wunused-variable] 469 | local_scalar_t__ u = DUMMY_VAR__; | ^ ./stanExports_gp_marginal.h:916:12: note: in instantiation of function template specialization 'model_gp_marginal_namespace::model_gp_marginal::log_prob_impl, Eigen::Matrix, nullptr, nullptr>' requested here 916 | return log_prob_impl(params_r, params_i, pstream); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_base_crtp.hpp:126:50: note: in instantiation of function template specialization 'model_gp_marginal_namespace::model_gp_marginal::log_prob' requested here 126 | return static_cast(this)->template log_prob(theta, | ^ ./stanExports_gp_marginal.h:149:3: note: in instantiation of member function 'stan::model::model_base_crtp::log_prob_propto_jacobian' requested here 149 | ~model_gp_marginal() {} | ^ ./stanExports_gp_marginal.h:469:26: warning: unused variable 'u' [-Wunused-variable] 469 | local_scalar_t__ u = DUMMY_VAR__; | ^ ./stanExports_gp_marginal.h:921:12: note: in instantiation of function template specialization 'model_gp_marginal_namespace::model_gp_marginal::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 921 | return log_prob_impl(params_r, params_i, pstream); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_base_crtp.hpp:162:50: note: in instantiation of function template specialization 'model_gp_marginal_namespace::model_gp_marginal::log_prob>' requested here 162 | return static_cast(this)->template log_prob( | ^ ./stanExports_gp_marginal.h:149:3: note: in instantiation of member function 'stan::model::model_base_crtp::log_prob' requested here 149 | ~model_gp_marginal() {} | ^ ./stanExports_gp_marginal.h:469:26: warning: unused variable 'u' [-Wunused-variable] 469 | local_scalar_t__ u = DUMMY_VAR__; | ^ ./stanExports_gp_marginal.h:921:12: note: in instantiation of function template specialization 'model_gp_marginal_namespace::model_gp_marginal::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 921 | return log_prob_impl(params_r, params_i, pstream); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_base_crtp.hpp:175:50: note: in instantiation of function template specialization 'model_gp_marginal_namespace::model_gp_marginal::log_prob>' requested here 175 | return static_cast(this)->template log_prob( | ^ ./stanExports_gp_marginal.h:149:3: note: in instantiation of member function 'stan::model::model_base_crtp::log_prob_jacobian' requested here 149 | ~model_gp_marginal() {} | ^ ./stanExports_gp_marginal.h:469:26: warning: unused variable 'u' [-Wunused-variable] 469 | local_scalar_t__ u = DUMMY_VAR__; | ^ ./stanExports_gp_marginal.h:921:12: note: in instantiation of function template specialization 'model_gp_marginal_namespace::model_gp_marginal::log_prob_impl, std::vector, nullptr, nullptr>' requested here 921 | return log_prob_impl(params_r, params_i, pstream); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_base_crtp.hpp:182:50: note: in instantiation of function template specialization 'model_gp_marginal_namespace::model_gp_marginal::log_prob' requested here 182 | return static_cast(this)->template log_prob( | ^ ./stanExports_gp_marginal.h:149:3: note: in instantiation of member function 'stan::model::model_base_crtp::log_prob_propto' requested here 149 | ~model_gp_marginal() {} | ^ ./stanExports_gp_marginal.h:469:26: warning: unused variable 'u' [-Wunused-variable] 469 | local_scalar_t__ u = DUMMY_VAR__; | ^ ./stanExports_gp_marginal.h:921:12: note: in instantiation of function template specialization 'model_gp_marginal_namespace::model_gp_marginal::log_prob_impl, std::vector, nullptr, nullptr>' requested here 921 | return log_prob_impl(params_r, params_i, pstream); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_base_crtp.hpp:195:50: note: in instantiation of function template specialization 'model_gp_marginal_namespace::model_gp_marginal::log_prob' requested here 195 | return static_cast(this)->template log_prob( | ^ ./stanExports_gp_marginal.h:149:3: note: in instantiation of member function 'stan::model::model_base_crtp::log_prob_propto_jacobian' requested here 149 | ~model_gp_marginal() {} | ^ 35 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"../inst/include" -I"/data/gannet/ripley/R/test-clang/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/rstan/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c stanExports_ind_gpp_marginal.cc -o stanExports_ind_gpp_marginal.o In file included from stanExports_ind_gpp_marginal.cc:5: In file included from ./stanExports_ind_gpp_marginal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from stanExports_ind_gpp_marginal.cc:5: In file included from ./stanExports_ind_gpp_marginal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from stanExports_ind_gpp_marginal.cc:5: In file included from ./stanExports_ind_gpp_marginal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:21: /data/gannet/ripley/R/test-clang/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] 47 | virtual std::streamsize xsputn(const char_type* s, int n) { | ^ /usr/local/clang18/bin/../include/c++/v1/streambuf:276:22: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int') 276 | virtual streamsize xsputn(const char_type* __s, streamsize __n); | ^ In file included from stanExports_ind_gpp_marginal.cc:5: In file included from ./stanExports_ind_gpp_marginal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:21: /data/gannet/ripley/R/test-clang/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] 70 | virtual std::streamsize xsputn(const char_type* s, int n) { | ^ /usr/local/clang18/bin/../include/c++/v1/streambuf:276:22: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int') 276 | virtual streamsize xsputn(const char_type* __s, streamsize __n); | ^ In file included from stanExports_ind_gpp_marginal.cc:5: In file included from ./stanExports_ind_gpp_marginal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:31: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from stanExports_ind_gpp_marginal.cc:5: In file included from ./stanExports_ind_gpp_marginal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:31: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ In file included from stanExports_ind_gpp_marginal.cc:5: In file included from ./stanExports_ind_gpp_marginal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:14: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun.hpp:35: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8: /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags] 57 | struct ops_partials_edge> { | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here? 45 | class ops_partials_edge; | ^~~~~ | struct In file included from stanExports_ind_gpp_marginal.cc:5: In file included from ./stanExports_ind_gpp_marginal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:34: /data/gannet/ripley/R/test-clang/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token] 166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_ind_gpp_marginal.cc:5: In file included from ./stanExports_ind_gpp_marginal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21: /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token] 125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_ind_gpp_marginal.cc:5: In file included from ./stanExports_ind_gpp_marginal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:131: /data/gannet/ripley/R/test-clang/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token] 49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_ind_gpp_marginal.cc:5: In file included from ./stanExports_ind_gpp_marginal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:39: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/linear_algebra.hpp:20: /data/gannet/ripley/R/test-clang/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token] 75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_ind_gpp_marginal.cc:5: In file included from ./stanExports_ind_gpp_marginal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:40: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/unscale.hpp:28: /data/gannet/ripley/R/test-clang/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token] 139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_ind_gpp_marginal.cc:5: In file included from ./stanExports_ind_gpp_marginal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20: /data/gannet/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token] 120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_ind_gpp_marginal.cc:5: In file included from ./stanExports_ind_gpp_marginal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:21: /data/gannet/ripley/R/test-clang/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token] 99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_ind_gpp_marginal.cc:5: In file included from ./stanExports_ind_gpp_marginal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token] 495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_ind_gpp_marginal.cc:5: In file included from ./stanExports_ind_gpp_marginal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] 1252 | int ret = stan::services::error_codes::CONFIG; | ^ In file included from stanExports_ind_gpp_marginal.cc:5: ./stanExports_ind_gpp_marginal.h:1084:11: warning: variable 'pos__' set but not used [-Wunused-but-set-variable] 1084 | int pos__ = std::numeric_limits::min(); | ^ In file included from stanExports_ind_gpp_marginal.cc:5: In file included from ./stanExports_ind_gpp_marginal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:14: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun.hpp:46: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/choose.hpp:7: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/math/special_functions/binomial.hpp:15: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/math/special_functions/beta.hpp:1721: /data/gannet/ripley/R/test-clang/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable] 29 | const T x_extrema = 1 / (1 + a); | ^~~~~~~~~ /data/gannet/ripley/R/test-clang/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder::temme_root_finder' requested here 304 | temme_root_finder(-lu, alpha), x, lower, upper, policies::digits() / 2); | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse, boost::math::policies::promote_float, boost::math::policies::promote_double>>' requested here 615 | x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol); | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp, boost::math::policies::promote_float, boost::math::policies::promote_double>>' requested here 992 | rx = detail::ibeta_inv_imp( | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv, boost::math::policies::pole_error, boost::math::policies::promote_double, boost::math::policies::digits2<>>>' requested here 1023 | return ibeta_inv(a, b, p, static_cast(nullptr), pol); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv, boost::math::policies::pole_error, boost::math::policies::promote_double, boost::math::policies::digits2<>>>' requested here 32 | return boost::math::ibeta_inv(a, b, p, boost_policy_t<>()); | ^ 19 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"../inst/include" -I"/data/gannet/ripley/R/test-clang/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/rstan/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c stanExports_normal.cc -o stanExports_normal.o In file included from stanExports_normal.cc:5: In file included from ./stanExports_normal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from stanExports_normal.cc:5: In file included from ./stanExports_normal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from stanExports_normal.cc:5: In file included from ./stanExports_normal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:21: /data/gannet/ripley/R/test-clang/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] 47 | virtual std::streamsize xsputn(const char_type* s, int n) { | ^ /usr/local/clang18/bin/../include/c++/v1/streambuf:276:22: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int') 276 | virtual streamsize xsputn(const char_type* __s, streamsize __n); | ^ In file included from stanExports_normal.cc:5: In file included from ./stanExports_normal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:21: /data/gannet/ripley/R/test-clang/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] 70 | virtual std::streamsize xsputn(const char_type* s, int n) { | ^ /usr/local/clang18/bin/../include/c++/v1/streambuf:276:22: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int') 276 | virtual streamsize xsputn(const char_type* __s, streamsize __n); | ^ In file included from stanExports_normal.cc:5: In file included from ./stanExports_normal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:31: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from stanExports_normal.cc:5: In file included from ./stanExports_normal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:31: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ In file included from stanExports_normal.cc:5: In file included from ./stanExports_normal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:14: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun.hpp:35: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8: /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags] 57 | struct ops_partials_edge> { | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here? 45 | class ops_partials_edge; | ^~~~~ | struct In file included from stanExports_normal.cc:5: In file included from ./stanExports_normal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:34: /data/gannet/ripley/R/test-clang/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token] 166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_normal.cc:5: In file included from ./stanExports_normal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21: /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token] 125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_normal.cc:5: In file included from ./stanExports_normal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:131: /data/gannet/ripley/R/test-clang/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token] 49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_normal.cc:5: In file included from ./stanExports_normal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:39: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/linear_algebra.hpp:20: /data/gannet/ripley/R/test-clang/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token] 75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_normal.cc:5: In file included from ./stanExports_normal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:40: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/unscale.hpp:28: /data/gannet/ripley/R/test-clang/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token] 139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_normal.cc:5: In file included from ./stanExports_normal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20: /data/gannet/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token] 120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_normal.cc:5: In file included from ./stanExports_normal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:21: /data/gannet/ripley/R/test-clang/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token] 99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_normal.cc:5: In file included from ./stanExports_normal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token] 495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_normal.cc:5: In file included from ./stanExports_normal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] 1252 | int ret = stan::services::error_codes::CONFIG; | ^ In file included from stanExports_normal.cc:5: ./stanExports_normal.h:74:11: warning: variable 'pos__' set but not used [-Wunused-but-set-variable] 74 | int pos__ = std::numeric_limits::min(); | ^ ./stanExports_normal.h:246:11: warning: variable 'pos__' set but not used [-Wunused-but-set-variable] 246 | int pos__ = std::numeric_limits::min(); | ^ ./stanExports_normal.h:277:11: warning: variable 'pos__' set but not used [-Wunused-but-set-variable] 277 | int pos__ = std::numeric_limits::min(); | ^ In file included from stanExports_normal.cc:5: In file included from ./stanExports_normal.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:14: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun.hpp:46: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/choose.hpp:7: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/math/special_functions/binomial.hpp:15: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/math/special_functions/beta.hpp:1721: /data/gannet/ripley/R/test-clang/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable] 29 | const T x_extrema = 1 / (1 + a); | ^~~~~~~~~ /data/gannet/ripley/R/test-clang/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder::temme_root_finder' requested here 304 | temme_root_finder(-lu, alpha), x, lower, upper, policies::digits() / 2); | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse, boost::math::policies::promote_float, boost::math::policies::promote_double>>' requested here 615 | x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol); | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp, boost::math::policies::promote_float, boost::math::policies::promote_double>>' requested here 992 | rx = detail::ibeta_inv_imp( | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv, boost::math::policies::pole_error, boost::math::policies::promote_double, boost::math::policies::digits2<>>>' requested here 1023 | return ibeta_inv(a, b, p, static_cast(nullptr), pol); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv, boost::math::policies::pole_error, boost::math::policies::promote_double, boost::math::policies::digits2<>>>' requested here 32 | return boost::math::ibeta_inv(a, b, p, boost_policy_t<>()); | ^ 21 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"../inst/include" -I"/data/gannet/ripley/R/test-clang/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/rstan/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c stanExports_spatial_model.cc -o stanExports_spatial_model.o In file included from stanExports_spatial_model.cc:5: In file included from ./stanExports_spatial_model.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from stanExports_spatial_model.cc:5: In file included from ./stanExports_spatial_model.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from stanExports_spatial_model.cc:5: In file included from ./stanExports_spatial_model.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:21: /data/gannet/ripley/R/test-clang/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] 47 | virtual std::streamsize xsputn(const char_type* s, int n) { | ^ /usr/local/clang18/bin/../include/c++/v1/streambuf:276:22: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int') 276 | virtual streamsize xsputn(const char_type* __s, streamsize __n); | ^ In file included from stanExports_spatial_model.cc:5: In file included from ./stanExports_spatial_model.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:21: /data/gannet/ripley/R/test-clang/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] 70 | virtual std::streamsize xsputn(const char_type* s, int n) { | ^ /usr/local/clang18/bin/../include/c++/v1/streambuf:276:22: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int') 276 | virtual streamsize xsputn(const char_type* __s, streamsize __n); | ^ In file included from stanExports_spatial_model.cc:5: In file included from ./stanExports_spatial_model.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:31: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from stanExports_spatial_model.cc:5: In file included from ./stanExports_spatial_model.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:31: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ In file included from stanExports_spatial_model.cc:5: In file included from ./stanExports_spatial_model.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:14: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun.hpp:35: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8: /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags] 57 | struct ops_partials_edge> { | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here? 45 | class ops_partials_edge; | ^~~~~ | struct In file included from stanExports_spatial_model.cc:5: In file included from ./stanExports_spatial_model.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:34: /data/gannet/ripley/R/test-clang/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token] 166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_spatial_model.cc:5: In file included from ./stanExports_spatial_model.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21: /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token] 125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_spatial_model.cc:5: In file included from ./stanExports_spatial_model.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:131: /data/gannet/ripley/R/test-clang/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token] 49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_spatial_model.cc:5: In file included from ./stanExports_spatial_model.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:39: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/linear_algebra.hpp:20: /data/gannet/ripley/R/test-clang/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token] 75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_spatial_model.cc:5: In file included from ./stanExports_spatial_model.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:40: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/unscale.hpp:28: /data/gannet/ripley/R/test-clang/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token] 139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_spatial_model.cc:5: In file included from ./stanExports_spatial_model.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20: /data/gannet/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token] 120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_spatial_model.cc:5: In file included from ./stanExports_spatial_model.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:21: /data/gannet/ripley/R/test-clang/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token] 99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_spatial_model.cc:5: In file included from ./stanExports_spatial_model.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token] 495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_spatial_model.cc:5: In file included from ./stanExports_spatial_model.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] 1252 | int ret = stan::services::error_codes::CONFIG; | ^ In file included from stanExports_spatial_model.cc:5: ./stanExports_spatial_model.h:490:11: warning: variable 'pos__' set but not used [-Wunused-but-set-variable] 490 | int pos__ = std::numeric_limits::min(); | ^ In file included from stanExports_spatial_model.cc:5: In file included from ./stanExports_spatial_model.h:23: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4: In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:14: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun.hpp:46: In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/choose.hpp:7: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/math/special_functions/binomial.hpp:15: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/math/special_functions/beta.hpp:1721: /data/gannet/ripley/R/test-clang/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable] 29 | const T x_extrema = 1 / (1 + a); | ^~~~~~~~~ /data/gannet/ripley/R/test-clang/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder::temme_root_finder' requested here 304 | temme_root_finder(-lu, alpha), x, lower, upper, policies::digits() / 2); | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse, boost::math::policies::promote_float, boost::math::policies::promote_double>>' requested here 615 | x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol); | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp, boost::math::policies::promote_float, boost::math::policies::promote_double>>' requested here 992 | rx = detail::ibeta_inv_imp( | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv, boost::math::policies::pole_error, boost::math::policies::promote_double, boost::math::policies::digits2<>>>' requested here 1023 | return ibeta_inv(a, b, p, static_cast(nullptr), pol); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv, boost::math::policies::pole_error, boost::math::policies::promote_double, boost::math::policies::digits2<>>>' requested here 32 | return boost::math::ibeta_inv(a, b, p, boost_policy_t<>()); | ^ In file included from stanExports_spatial_model.cc:5: ./stanExports_spatial_model.h:360:26: warning: unused variable 'u' [-Wunused-variable] 360 | local_scalar_t__ u = DUMMY_VAR__; | ^ ./stanExports_spatial_model.h:693:12: note: in instantiation of function template specialization 'model_spatial_model_namespace::model_spatial_model::log_prob_impl, std::vector, nullptr, nullptr>' requested here 693 | return log_prob_impl(params_r, params_i, pstream); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:129:33: note: in instantiation of function template specialization 'model_spatial_model_namespace::model_spatial_model::log_prob' requested here 129 | log_prob = model.template log_prob(unconstrained, | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_spatial_model.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_spatial_model.cc:5: ./stanExports_spatial_model.h:360:26: warning: unused variable 'u' [-Wunused-variable] 360 | local_scalar_t__ u = DUMMY_VAR__; | ^ ./stanExports_spatial_model.h:693:12: note: in instantiation of function template specialization 'model_spatial_model_namespace::model_spatial_model::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 693 | return log_prob_impl(params_r, params_i, pstream); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: in instantiation of function template specialization 'model_spatial_model_namespace::model_spatial_model::log_prob>' requested here 40 | var adLogProb = model.template log_prob( | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:167:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 167 | log_prob = stan::model::log_prob_grad( | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_spatial_model.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_spatial_model.cc:5: ./stanExports_spatial_model.h:360:26: warning: unused variable 'u' [-Wunused-variable] 360 | local_scalar_t__ u = DUMMY_VAR__; | ^ ./stanExports_spatial_model.h:693:12: note: in instantiation of function template specialization 'model_spatial_model_namespace::model_spatial_model::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 693 | return log_prob_impl(params_r, params_i, pstream); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: in instantiation of function template specialization 'model_spatial_model_namespace::model_spatial_model::log_prob>' requested here 40 | var adLogProb = model.template log_prob( | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:167:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 167 | log_prob = stan::model::log_prob_grad( | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/optimize/newton.hpp:50:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 50 | std::vector cont_vector = util::initialize( | ^ /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:502:35: note: in instantiation of function template specialization 'stan::services::optimize::newton' requested here 502 | = stan::services::optimize::newton(model, *init_context_ptr, | ^ /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_spatial_model.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_spatial_model.cc:5: ./stanExports_spatial_model.h:360:26: warning: unused variable 'u' [-Wunused-variable] 360 | local_scalar_t__ u = DUMMY_VAR__; | ^ ./stanExports_spatial_model.h:693:12: note: in instantiation of function template specialization 'model_spatial_model_namespace::model_spatial_model::log_prob_impl, std::vector, nullptr, nullptr>' requested here 693 | return log_prob_impl(params_r, params_i, pstream); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:25: note: in instantiation of function template specialization 'model_spatial_model_namespace::model_spatial_model::log_prob' requested here 56 | lp = model.template log_prob(cont_vector, disc_vector, | ^ /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:502:35: note: in instantiation of function template specialization 'stan::services::optimize::newton' requested here 502 | = stan::services::optimize::newton(model, *init_context_ptr, | ^ /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_spatial_model.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_spatial_model.cc:5: ./stanExports_spatial_model.h:360:26: warning: unused variable 'u' [-Wunused-variable] 360 | local_scalar_t__ u = DUMMY_VAR__; | ^ ./stanExports_spatial_model.h:688:12: note: in instantiation of function template specialization 'model_spatial_model_namespace::model_spatial_model::log_prob_impl, -1, 1>, Eigen::Matrix, nullptr, nullptr>' requested here 688 | return log_prob_impl(params_r, params_i, pstream); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_functional.hpp:21:27: note: in instantiation of function template specialization 'model_spatial_model_namespace::model_spatial_model::log_prob>' requested here 21 | return model.template log_prob( | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/functor/gradient.hpp:51:16: note: in instantiation of function template specialization 'stan::model::model_functional::operator()>' requested here 51 | var fx_var = f(x_var); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/gradient.hpp:27:17: note: in instantiation of function template specialization 'stan::math::gradient>' requested here 27 | stan::math::gradient(model_functional(model, &ss), x, f, grad_f); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/base_hamiltonian.hpp:63:20: note: in instantiation of function template specialization 'stan::model::gradient' requested here 63 | stan::model::gradient(model_, z.q, z.V, z.g, logger); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/mcmc/hmc/integrators/expl_leapfrog.hpp:25:17: note: (skipping 5 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) 25 | hamiltonian.update_potential_gradient(z, logger); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e.hpp:74:54: note: in instantiation of member function 'stan::mcmc::dense_e_nuts, boost::random::linear_congruential_engine>>::dense_e_nuts' requested here 74 | stan::mcmc::dense_e_nuts sampler(model, rng); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e.hpp:128:10: note: in instantiation of function template specialization 'stan::services::sample::hmc_nuts_dense_e' requested here 128 | return hmc_nuts_dense_e(model, init, unit_e_metric, random_seed, chain, | ^ /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:621:13: note: in instantiation of function template specialization 'stan::services::sample::hmc_nuts_dense_e' requested here 621 | ::hmc_nuts_dense_e(model, *init_context_ptr, | ^ /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_spatial_model.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_spatial_model.cc:5: ./stanExports_spatial_model.h:360:26: warning: unused variable 'u' [-Wunused-variable] 360 | local_scalar_t__ u = DUMMY_VAR__; | ^ ./stanExports_spatial_model.h:688:12: note: in instantiation of function template specialization 'model_spatial_model_namespace::model_spatial_model::log_prob_impl, Eigen::Matrix, nullptr, nullptr>' requested here 688 | return log_prob_impl(params_r, params_i, pstream); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/variational/advi.hpp:514:31: note: in instantiation of function template specialization 'model_spatial_model_namespace::model_spatial_model::log_prob' requested here 514 | log_p = model_.template log_prob(cont_params_, &msg2); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/experimental/advi/fullrank.hpp:82:12: note: in instantiation of member function 'stan::variational::advi, boost::random::linear_congruential_engine>>::run' requested here 82 | cmd_advi.run(eta, adapt_engaged, adapt_iterations, tol_rel_obj, | ^ /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:890:9: note: in instantiation of function template specialization 'stan::services::experimental::advi::fullrank' requested here 890 | ::fullrank(model, *init_context_ptr, | ^ /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_spatial_model.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_spatial_model.cc:5: ./stanExports_spatial_model.h:360:26: warning: unused variable 'u' [-Wunused-variable] 360 | local_scalar_t__ u = DUMMY_VAR__; | ^ ./stanExports_spatial_model.h:688:12: note: in instantiation of function template specialization 'model_spatial_model_namespace::model_spatial_model::log_prob_impl, Eigen::Matrix, nullptr, nullptr>' requested here 688 | return log_prob_impl(params_r, params_i, pstream); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_base_crtp.hpp:93:50: note: in instantiation of function template specialization 'model_spatial_model_namespace::model_spatial_model::log_prob' requested here 93 | return static_cast(this)->template log_prob( | ^ ./stanExports_spatial_model.h:97:3: note: in instantiation of member function 'stan::model::model_base_crtp::log_prob' requested here 97 | ~model_spatial_model() {} | ^ ./stanExports_spatial_model.h:360:26: warning: unused variable 'u' [-Wunused-variable] 360 | local_scalar_t__ u = DUMMY_VAR__; | ^ ./stanExports_spatial_model.h:688:12: note: in instantiation of function template specialization 'model_spatial_model_namespace::model_spatial_model::log_prob_impl, -1, 1>, Eigen::Matrix, nullptr, nullptr>' requested here 688 | return log_prob_impl(params_r, params_i, pstream); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_base_crtp.hpp:98:50: note: in instantiation of function template specialization 'model_spatial_model_namespace::model_spatial_model::log_prob>' requested here 98 | return static_cast(this)->template log_prob(theta, | ^ ./stanExports_spatial_model.h:97:3: note: in instantiation of member function 'stan::model::model_base_crtp::log_prob' requested here 97 | ~model_spatial_model() {} | ^ ./stanExports_spatial_model.h:360:26: warning: unused variable 'u' [-Wunused-variable] 360 | local_scalar_t__ u = DUMMY_VAR__; | ^ ./stanExports_spatial_model.h:688:12: note: in instantiation of function template specialization 'model_spatial_model_namespace::model_spatial_model::log_prob_impl, -1, 1>, Eigen::Matrix, nullptr, nullptr>' requested here 688 | return log_prob_impl(params_r, params_i, pstream); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_base_crtp.hpp:109:50: note: in instantiation of function template specialization 'model_spatial_model_namespace::model_spatial_model::log_prob>' requested here 109 | return static_cast(this)->template log_prob(theta, | ^ ./stanExports_spatial_model.h:97:3: note: in instantiation of member function 'stan::model::model_base_crtp::log_prob_jacobian' requested here 97 | ~model_spatial_model() {} | ^ ./stanExports_spatial_model.h:360:26: warning: unused variable 'u' [-Wunused-variable] 360 | local_scalar_t__ u = DUMMY_VAR__; | ^ ./stanExports_spatial_model.h:688:12: note: in instantiation of function template specialization 'model_spatial_model_namespace::model_spatial_model::log_prob_impl, Eigen::Matrix, nullptr, nullptr>' requested here 688 | return log_prob_impl(params_r, params_i, pstream); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_base_crtp.hpp:115:50: note: in instantiation of function template specialization 'model_spatial_model_namespace::model_spatial_model::log_prob' requested here 115 | return static_cast(this)->template log_prob(theta, | ^ ./stanExports_spatial_model.h:97:3: note: in instantiation of member function 'stan::model::model_base_crtp::log_prob_propto' requested here 97 | ~model_spatial_model() {} | ^ ./stanExports_spatial_model.h:360:26: warning: unused variable 'u' [-Wunused-variable] 360 | local_scalar_t__ u = DUMMY_VAR__; | ^ ./stanExports_spatial_model.h:688:12: note: in instantiation of function template specialization 'model_spatial_model_namespace::model_spatial_model::log_prob_impl, -1, 1>, Eigen::Matrix, nullptr, nullptr>' requested here 688 | return log_prob_impl(params_r, params_i, pstream); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_base_crtp.hpp:120:50: note: in instantiation of function template specialization 'model_spatial_model_namespace::model_spatial_model::log_prob>' requested here 120 | return static_cast(this)->template log_prob(theta, | ^ ./stanExports_spatial_model.h:97:3: note: in instantiation of member function 'stan::model::model_base_crtp::log_prob_propto' requested here 97 | ~model_spatial_model() {} | ^ ./stanExports_spatial_model.h:360:26: warning: unused variable 'u' [-Wunused-variable] 360 | local_scalar_t__ u = DUMMY_VAR__; | ^ ./stanExports_spatial_model.h:688:12: note: in instantiation of function template specialization 'model_spatial_model_namespace::model_spatial_model::log_prob_impl, Eigen::Matrix, nullptr, nullptr>' requested here 688 | return log_prob_impl(params_r, params_i, pstream); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_base_crtp.hpp:126:50: note: in instantiation of function template specialization 'model_spatial_model_namespace::model_spatial_model::log_prob' requested here 126 | return static_cast(this)->template log_prob(theta, | ^ ./stanExports_spatial_model.h:97:3: note: in instantiation of member function 'stan::model::model_base_crtp::log_prob_propto_jacobian' requested here 97 | ~model_spatial_model() {} | ^ ./stanExports_spatial_model.h:360:26: warning: unused variable 'u' [-Wunused-variable] 360 | local_scalar_t__ u = DUMMY_VAR__; | ^ ./stanExports_spatial_model.h:693:12: note: in instantiation of function template specialization 'model_spatial_model_namespace::model_spatial_model::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 693 | return log_prob_impl(params_r, params_i, pstream); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_base_crtp.hpp:162:50: note: in instantiation of function template specialization 'model_spatial_model_namespace::model_spatial_model::log_prob>' requested here 162 | return static_cast(this)->template log_prob( | ^ ./stanExports_spatial_model.h:97:3: note: in instantiation of member function 'stan::model::model_base_crtp::log_prob' requested here 97 | ~model_spatial_model() {} | ^ ./stanExports_spatial_model.h:360:26: warning: unused variable 'u' [-Wunused-variable] 360 | local_scalar_t__ u = DUMMY_VAR__; | ^ ./stanExports_spatial_model.h:693:12: note: in instantiation of function template specialization 'model_spatial_model_namespace::model_spatial_model::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 693 | return log_prob_impl(params_r, params_i, pstream); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_base_crtp.hpp:175:50: note: in instantiation of function template specialization 'model_spatial_model_namespace::model_spatial_model::log_prob>' requested here 175 | return static_cast(this)->template log_prob( | ^ ./stanExports_spatial_model.h:97:3: note: in instantiation of member function 'stan::model::model_base_crtp::log_prob_jacobian' requested here 97 | ~model_spatial_model() {} | ^ ./stanExports_spatial_model.h:360:26: warning: unused variable 'u' [-Wunused-variable] 360 | local_scalar_t__ u = DUMMY_VAR__; | ^ ./stanExports_spatial_model.h:693:12: note: in instantiation of function template specialization 'model_spatial_model_namespace::model_spatial_model::log_prob_impl, std::vector, nullptr, nullptr>' requested here 693 | return log_prob_impl(params_r, params_i, pstream); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_base_crtp.hpp:182:50: note: in instantiation of function template specialization 'model_spatial_model_namespace::model_spatial_model::log_prob' requested here 182 | return static_cast(this)->template log_prob( | ^ ./stanExports_spatial_model.h:97:3: note: in instantiation of member function 'stan::model::model_base_crtp::log_prob_propto' requested here 97 | ~model_spatial_model() {} | ^ ./stanExports_spatial_model.h:360:26: warning: unused variable 'u' [-Wunused-variable] 360 | local_scalar_t__ u = DUMMY_VAR__; | ^ ./stanExports_spatial_model.h:693:12: note: in instantiation of function template specialization 'model_spatial_model_namespace::model_spatial_model::log_prob_impl, std::vector, nullptr, nullptr>' requested here 693 | return log_prob_impl(params_r, params_i, pstream); | ^ /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_base_crtp.hpp:195:50: note: in instantiation of function template specialization 'model_spatial_model_namespace::model_spatial_model::log_prob' requested here 195 | return static_cast(this)->template log_prob( | ^ ./stanExports_spatial_model.h:97:3: note: in instantiation of member function 'stan::model::model_base_crtp::log_prob_propto_jacobian' requested here 97 | ~model_spatial_model() {} | ^ 35 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o bmstdr.so RcppExports.o crps.o stanExports_gp_marginal.o stanExports_ind_gpp_marginal.o stanExports_normal.o stanExports_spatial_model.o -L/data/gannet/ripley/R/test-clang/RcppParallel/lib/ -Wl,-rpath,/data/gannet/ripley/R/test-clang/RcppParallel/lib/ -ltbb -ltbbmalloc make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/bmstdr/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/bmstdr/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/bmstdr/src' installing to /data/gannet/ripley/R/packages/tests-clang/bmstdr.Rcheck/00LOCK-bmstdr/00new/bmstdr/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bmstdr)