* installing *source* package ‘blockcluster’ ...
** package ‘blockcluster’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 18.1.4’
using C++ compiler: ‘clang version 18.1.4’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/blockcluster/src'
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRPACKAGE  `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CppFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/rtkore/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c init_blockcluster.c -o init_blockcluster.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRPACKAGE  `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CppFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/rtkore/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c coclust/src/Algorithms/CEMAlgo.cpp -o coclust/src/Algorithms/CEMAlgo.o
In file included from coclust/src/Algorithms/CEMAlgo.cpp:31:
In file included from coclust/src/Algorithms/CEMAlgo.h:35:
In file included from coclust/src/Algorithms/IAlgo.h:33:
In file included from coclust/src/Algorithms/../Models/ICoClustModel.h:34:
In file included from coclust/src/Algorithms/../Models/../InputParameters/InputParameters.h:32:
In file included from coclust/src/Algorithms/../Models/../InputParameters/../typedefs/typedef.h:37:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/RTKpp.h:41:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/STKpp.h:156:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/Arrays.h:107:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/Arrays/include/STK_Display.h:39:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ExportToCsv.h:39:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ReadWriteCsv.h:44:
/data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_Variable.h:237:11: warning: variable 'code' set but not used [-Wunused-but-set-variable]
  237 |     { int code = baseIdx;
      |           ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRPACKAGE  `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CppFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/rtkore/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c coclust/src/Algorithms/EMAlgo.cpp -o coclust/src/Algorithms/EMAlgo.o
In file included from coclust/src/Algorithms/EMAlgo.cpp:31:
In file included from coclust/src/Algorithms/EMAlgo.h:35:
In file included from coclust/src/Algorithms/IAlgo.h:33:
In file included from coclust/src/Algorithms/../Models/ICoClustModel.h:34:
In file included from coclust/src/Algorithms/../Models/../InputParameters/InputParameters.h:32:
In file included from coclust/src/Algorithms/../Models/../InputParameters/../typedefs/typedef.h:37:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/RTKpp.h:41:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/STKpp.h:156:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/Arrays.h:107:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/Arrays/include/STK_Display.h:39:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ExportToCsv.h:39:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ReadWriteCsv.h:44:
/data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_Variable.h:237:11: warning: variable 'code' set but not used [-Wunused-but-set-variable]
  237 |     { int code = baseIdx;
      |           ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRPACKAGE  `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CppFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/rtkore/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c coclust/src/Algorithms/GibbsAlgo.cpp -o coclust/src/Algorithms/GibbsAlgo.o
In file included from coclust/src/Algorithms/GibbsAlgo.cpp:31:
In file included from coclust/src/Algorithms/GibbsAlgo.h:34:
In file included from coclust/src/Algorithms/IAlgo.h:33:
In file included from coclust/src/Algorithms/../Models/ICoClustModel.h:34:
In file included from coclust/src/Algorithms/../Models/../InputParameters/InputParameters.h:32:
In file included from coclust/src/Algorithms/../Models/../InputParameters/../typedefs/typedef.h:37:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/RTKpp.h:41:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/STKpp.h:156:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/Arrays.h:107:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/Arrays/include/STK_Display.h:39:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ExportToCsv.h:39:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ReadWriteCsv.h:44:
/data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_Variable.h:237:11: warning: variable 'code' set but not used [-Wunused-but-set-variable]
  237 |     { int code = baseIdx;
      |           ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRPACKAGE  `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CppFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/rtkore/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c coclust/src/Algorithms/SEMAlgo.cpp -o coclust/src/Algorithms/SEMAlgo.o
In file included from coclust/src/Algorithms/SEMAlgo.cpp:31:
In file included from coclust/src/Algorithms/SEMAlgo.h:34:
In file included from coclust/src/Algorithms/IAlgo.h:33:
In file included from coclust/src/Algorithms/../Models/ICoClustModel.h:34:
In file included from coclust/src/Algorithms/../Models/../InputParameters/InputParameters.h:32:
In file included from coclust/src/Algorithms/../Models/../InputParameters/../typedefs/typedef.h:37:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/RTKpp.h:41:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/STKpp.h:156:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/Arrays.h:107:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/Arrays/include/STK_Display.h:39:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ExportToCsv.h:39:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ReadWriteCsv.h:44:
/data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_Variable.h:237:11: warning: variable 'code' set but not used [-Wunused-but-set-variable]
  237 |     { int code = baseIdx;
      |           ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRPACKAGE  `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CppFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/rtkore/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c coclust/src/CoClustFacade/CoCluster.cpp -o coclust/src/CoClustFacade/CoCluster.o
In file included from coclust/src/CoClustFacade/CoCluster.cpp:30:
In file included from coclust/src/CoClustFacade/CoCluster.h:32:
In file included from coclust/src/CoClustFacade/../Strategy/IStrategy.h:33:
In file included from coclust/src/CoClustFacade/../Strategy/../Models/ICoClustModel.h:34:
In file included from coclust/src/CoClustFacade/../Strategy/../Models/../InputParameters/InputParameters.h:32:
In file included from coclust/src/CoClustFacade/../Strategy/../Models/../InputParameters/../typedefs/typedef.h:37:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/RTKpp.h:41:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/STKpp.h:156:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/Arrays.h:107:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/Arrays/include/STK_Display.h:39:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ExportToCsv.h:39:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ReadWriteCsv.h:44:
/data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_Variable.h:237:11: warning: variable 'code' set but not used [-Wunused-but-set-variable]
  237 |     { int code = baseIdx;
      |           ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRPACKAGE  `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CppFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/rtkore/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c coclust/src/Strategy/XStrategyAlgo.cpp -o coclust/src/Strategy/XStrategyAlgo.o
In file included from coclust/src/Strategy/XStrategyAlgo.cpp:32:
In file included from coclust/src/Strategy/XStrategyAlgo.h:36:
In file included from coclust/src/Strategy/IStrategy.h:33:
In file included from coclust/src/Strategy/../Models/ICoClustModel.h:34:
In file included from coclust/src/Strategy/../Models/../InputParameters/InputParameters.h:32:
In file included from coclust/src/Strategy/../Models/../InputParameters/../typedefs/typedef.h:37:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/RTKpp.h:41:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/STKpp.h:156:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/Arrays.h:107:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/Arrays/include/STK_Display.h:39:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ExportToCsv.h:39:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ReadWriteCsv.h:44:
/data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_Variable.h:237:11: warning: variable 'code' set but not used [-Wunused-but-set-variable]
  237 |     { int code = baseIdx;
      |           ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRPACKAGE  `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CppFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/rtkore/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c coclust/src/Strategy/XStrategyforSEMAlgo.cpp -o coclust/src/Strategy/XStrategyforSEMAlgo.o
In file included from coclust/src/Strategy/XStrategyforSEMAlgo.cpp:32:
In file included from coclust/src/Strategy/XStrategyforSEMAlgo.h:34:
In file included from coclust/src/Strategy/IStrategy.h:33:
In file included from coclust/src/Strategy/../Models/ICoClustModel.h:34:
In file included from coclust/src/Strategy/../Models/../InputParameters/InputParameters.h:32:
In file included from coclust/src/Strategy/../Models/../InputParameters/../typedefs/typedef.h:37:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/RTKpp.h:41:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/STKpp.h:156:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/Arrays.h:107:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/Arrays/include/STK_Display.h:39:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ExportToCsv.h:39:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ReadWriteCsv.h:44:
/data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_Variable.h:237:11: warning: variable 'code' set but not used [-Wunused-but-set-variable]
  237 |     { int code = baseIdx;
      |           ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRPACKAGE  `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CppFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/rtkore/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c coclust/src/InputParameters/InputParameters.cpp -o coclust/src/InputParameters/InputParameters.o
In file included from coclust/src/InputParameters/InputParameters.cpp:30:
In file included from coclust/src/InputParameters/../Models/ICoClustModel.h:34:
In file included from coclust/src/InputParameters/../Models/../InputParameters/InputParameters.h:32:
In file included from coclust/src/InputParameters/../Models/../InputParameters/../typedefs/typedef.h:37:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/RTKpp.h:41:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/STKpp.h:156:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/Arrays.h:107:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/Arrays/include/STK_Display.h:39:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ExportToCsv.h:39:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ReadWriteCsv.h:44:
/data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_Variable.h:237:11: warning: variable 'code' set but not used [-Wunused-but-set-variable]
  237 |     { int code = baseIdx;
      |           ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRPACKAGE  `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CppFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/rtkore/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c coclust/src/Models/BinaryLBModel.cpp -o coclust/src/Models/BinaryLBModel.o
In file included from coclust/src/Models/BinaryLBModel.cpp:33:
In file included from coclust/src/Models/BinaryLBModel.h:39:
In file included from coclust/src/Models/../typedefs/typedef.h:37:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/RTKpp.h:41:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/STKpp.h:156:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/Arrays.h:107:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/Arrays/include/STK_Display.h:39:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ExportToCsv.h:39:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ReadWriteCsv.h:44:
/data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_Variable.h:237:11: warning: variable 'code' set but not used [-Wunused-but-set-variable]
  237 |     { int code = baseIdx;
      |           ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRPACKAGE  `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CppFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/rtkore/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c coclust/src/Models/BinaryLBModelequalepsilon.cpp -o coclust/src/Models/BinaryLBModelequalepsilon.o
In file included from coclust/src/Models/BinaryLBModelequalepsilon.cpp:30:
In file included from coclust/src/Models/BinaryLBModelequalepsilon.h:38:
In file included from coclust/src/Models/../typedefs/typedef.h:37:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/RTKpp.h:41:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/STKpp.h:156:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/Arrays.h:107:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/Arrays/include/STK_Display.h:39:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ExportToCsv.h:39:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ReadWriteCsv.h:44:
/data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_Variable.h:237:11: warning: variable 'code' set but not used [-Wunused-but-set-variable]
  237 |     { int code = baseIdx;
      |           ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRPACKAGE  `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CppFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/rtkore/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c coclust/src/Models/CategoricalLBModel.cpp -o coclust/src/Models/CategoricalLBModel.o
In file included from coclust/src/Models/CategoricalLBModel.cpp:26:
In file included from coclust/src/Models/CategoricalLBModel.h:31:
In file included from coclust/src/Models/ICoClustModel.h:34:
In file included from coclust/src/Models/../InputParameters/InputParameters.h:32:
In file included from coclust/src/Models/../InputParameters/../typedefs/typedef.h:37:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/RTKpp.h:41:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/STKpp.h:156:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/Arrays.h:107:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/Arrays/include/STK_Display.h:39:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ExportToCsv.h:39:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ReadWriteCsv.h:44:
/data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_Variable.h:237:11: warning: variable 'code' set but not used [-Wunused-but-set-variable]
  237 |     { int code = baseIdx;
      |           ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRPACKAGE  `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CppFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/rtkore/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c coclust/src/Models/ContingencyLBModel.cpp -o coclust/src/Models/ContingencyLBModel.o
In file included from coclust/src/Models/ContingencyLBModel.cpp:29:
In file included from coclust/src/Models/ContingencyLBModel.h:36:
In file included from coclust/src/Models/ICoClustModel.h:34:
In file included from coclust/src/Models/../InputParameters/InputParameters.h:32:
In file included from coclust/src/Models/../InputParameters/../typedefs/typedef.h:37:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/RTKpp.h:41:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/STKpp.h:156:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/Arrays.h:107:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/Arrays/include/STK_Display.h:39:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ExportToCsv.h:39:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ReadWriteCsv.h:44:
/data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_Variable.h:237:11: warning: variable 'code' set but not used [-Wunused-but-set-variable]
  237 |     { int code = baseIdx;
      |           ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRPACKAGE  `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CppFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/rtkore/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c coclust/src/Models/ContingencyLBModel_mu_i_nu_j.cpp -o coclust/src/Models/ContingencyLBModel_mu_i_nu_j.o
In file included from coclust/src/Models/ContingencyLBModel_mu_i_nu_j.cpp:30:
In file included from coclust/src/Models/ContingencyLBModel_mu_i_nu_j.h:37:
In file included from coclust/src/Models/ICoClustModel.h:34:
In file included from coclust/src/Models/../InputParameters/InputParameters.h:32:
In file included from coclust/src/Models/../InputParameters/../typedefs/typedef.h:37:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/RTKpp.h:41:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/STKpp.h:156:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/Arrays.h:107:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/Arrays/include/STK_Display.h:39:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ExportToCsv.h:39:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ReadWriteCsv.h:44:
/data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_Variable.h:237:11: warning: variable 'code' set but not used [-Wunused-but-set-variable]
  237 |     { int code = baseIdx;
      |           ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRPACKAGE  `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CppFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/rtkore/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c coclust/src/Models/ContinuousLBModel.cpp -o coclust/src/Models/ContinuousLBModel.o
In file included from coclust/src/Models/ContinuousLBModel.cpp:30:
In file included from coclust/src/Models/ContinuousLBModel.h:33:
In file included from coclust/src/Models/ICoClustModel.h:34:
In file included from coclust/src/Models/../InputParameters/InputParameters.h:32:
In file included from coclust/src/Models/../InputParameters/../typedefs/typedef.h:37:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/RTKpp.h:41:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/STKpp.h:156:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/Arrays.h:107:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/Arrays/include/STK_Display.h:39:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ExportToCsv.h:39:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ReadWriteCsv.h:44:
/data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_Variable.h:237:11: warning: variable 'code' set but not used [-Wunused-but-set-variable]
  237 |     { int code = baseIdx;
      |           ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRPACKAGE  `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CppFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/rtkore/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c coclust/src/Models/ContinuousLBModelequalsigma.cpp -o coclust/src/Models/ContinuousLBModelequalsigma.o
In file included from coclust/src/Models/ContinuousLBModelequalsigma.cpp:29:
In file included from coclust/src/Models/ContinuousLBModelequalsigma.h:36:
In file included from coclust/src/Models/ICoClustModel.h:34:
In file included from coclust/src/Models/../InputParameters/InputParameters.h:32:
In file included from coclust/src/Models/../InputParameters/../typedefs/typedef.h:37:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/RTKpp.h:41:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/STKpp.h:156:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/Arrays.h:107:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/Arrays/include/STK_Display.h:39:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ExportToCsv.h:39:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ReadWriteCsv.h:44:
/data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_Variable.h:237:11: warning: variable 'code' set but not used [-Wunused-but-set-variable]
  237 |     { int code = baseIdx;
      |           ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRPACKAGE  `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CppFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/rtkore/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c coclust/src/Models/ICoClustModel.cpp -o coclust/src/Models/ICoClustModel.o
In file included from coclust/src/Models/ICoClustModel.cpp:31:
In file included from coclust/src/Models/ICoClustModel.h:34:
In file included from coclust/src/Models/../InputParameters/InputParameters.h:32:
In file included from coclust/src/Models/../InputParameters/../typedefs/typedef.h:37:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/RTKpp.h:41:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/STKpp.h:156:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/Arrays.h:107:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/Arrays/include/STK_Display.h:39:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ExportToCsv.h:39:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ReadWriteCsv.h:44:
/data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_Variable.h:237:11: warning: variable 'code' set but not used [-Wunused-but-set-variable]
  237 |     { int code = baseIdx;
      |           ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRPACKAGE  `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CppFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/rtkore/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c BinaryDataExchange.cpp -o BinaryDataExchange.o
In file included from BinaryDataExchange.cpp:36:
In file included from ./BinaryDataExchange.h:42:
In file included from ./IDataExchange.h:41:
In file included from ./coclust/src/typedefs/typedef.h:37:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/RTKpp.h:41:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/STKpp.h:156:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/Arrays.h:107:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/Arrays/include/STK_Display.h:39:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ExportToCsv.h:39:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ReadWriteCsv.h:44:
/data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_Variable.h:237:11: warning: variable 'code' set but not used [-Wunused-but-set-variable]
  237 |     { int code = baseIdx;
      |           ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRPACKAGE  `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CppFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/rtkore/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c CategoricalDataExchange.cpp -o CategoricalDataExchange.o
In file included from CategoricalDataExchange.cpp:1:
In file included from ./CategoricalDataExchange.h:6:
In file included from ./IDataExchange.h:41:
In file included from ./coclust/src/typedefs/typedef.h:37:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/RTKpp.h:41:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/STKpp.h:156:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/Arrays.h:107:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/Arrays/include/STK_Display.h:39:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ExportToCsv.h:39:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ReadWriteCsv.h:44:
/data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_Variable.h:237:11: warning: variable 'code' set but not used [-Wunused-but-set-variable]
  237 |     { int code = baseIdx;
      |           ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRPACKAGE  `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CppFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/rtkore/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c ContingencyDataExchange.cpp -o ContingencyDataExchange.o
In file included from ContingencyDataExchange.cpp:36:
In file included from ./ContingencyDataExchange.h:42:
In file included from ./IDataExchange.h:41:
In file included from ./coclust/src/typedefs/typedef.h:37:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/RTKpp.h:41:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/STKpp.h:156:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/Arrays.h:107:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/Arrays/include/STK_Display.h:39:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ExportToCsv.h:39:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ReadWriteCsv.h:44:
/data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_Variable.h:237:11: warning: variable 'code' set but not used [-Wunused-but-set-variable]
  237 |     { int code = baseIdx;
      |           ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRPACKAGE  `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CppFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/rtkore/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c ContinuousDataExchange.cpp -o ContinuousDataExchange.o
In file included from ContinuousDataExchange.cpp:36:
In file included from ./ContinuousDataExchange.h:42:
In file included from ./IDataExchange.h:41:
In file included from ./coclust/src/typedefs/typedef.h:37:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/RTKpp.h:41:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/STKpp.h:156:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/Arrays.h:107:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/Arrays/include/STK_Display.h:39:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ExportToCsv.h:39:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ReadWriteCsv.h:44:
/data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_Variable.h:237:11: warning: variable 'code' set but not used [-Wunused-but-set-variable]
  237 |     { int code = baseIdx;
      |           ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRPACKAGE  `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CppFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/rtkore/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c IDataExchange.cpp -o IDataExchange.o
In file included from IDataExchange.cpp:39:
In file included from ./IDataExchange.h:41:
In file included from ./coclust/src/typedefs/typedef.h:37:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/RTKpp.h:41:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/STKpp.h:156:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/Arrays.h:107:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/Arrays/include/STK_Display.h:39:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ExportToCsv.h:39:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ReadWriteCsv.h:44:
/data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_Variable.h:237:11: warning: variable 'code' set but not used [-Wunused-but-set-variable]
  237 |     { int code = baseIdx;
      |           ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRPACKAGE  `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CppFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/rtkore/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c Rcoclustmain.cpp -o Rcoclustmain.o
In file included from Rcoclustmain.cpp:36:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/RTKpp.h:41:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/STKpp.h:156:
In file included from /data/gannet/ripley/R/test-clang/rtkore/include/Arrays.h:107:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/Arrays/include/STK_Display.h:39:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ExportToCsv.h:39:
In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ReadWriteCsv.h:44:
/data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_Variable.h:237:11: warning: variable 'code' set but not used [-Wunused-but-set-variable]
  237 |     { int code = baseIdx;
      |           ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o blockcluster.so init_blockcluster.o coclust/src/Algorithms/CEMAlgo.o coclust/src/Algorithms/EMAlgo.o coclust/src/Algorithms/GibbsAlgo.o coclust/src/Algorithms/SEMAlgo.o coclust/src/CoClustFacade/CoCluster.o coclust/src/Strategy/XStrategyAlgo.o coclust/src/Strategy/XStrategyforSEMAlgo.o coclust/src/InputParameters/InputParameters.o coclust/src/Models/BinaryLBModel.o coclust/src/Models/BinaryLBModelequalepsilon.o coclust/src/Models/CategoricalLBModel.o coclust/src/Models/ContingencyLBModel.o coclust/src/Models/ContingencyLBModel_mu_i_nu_j.o coclust/src/Models/ContinuousLBModel.o coclust/src/Models/ContinuousLBModelequalsigma.o coclust/src/Models/ICoClustModel.o BinaryDataExchange.o CategoricalDataExchange.o ContingencyDataExchange.o ContinuousDataExchange.o IDataExchange.o Rcoclustmain.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortran_main -lFortranRuntime -lFortranDecimal -lm -fopenmp
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/blockcluster/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/blockcluster/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/blockcluster/src'
installing to /data/gannet/ripley/R/packages/tests-clang/blockcluster.Rcheck/00LOCK-blockcluster/00new/blockcluster/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (blockcluster)