* installing *source* package ‘bioacoustics’ ...
** package ‘bioacoustics’ successfully unpacked and MD5 sums checked
** using staged installation
checking for gcc... /usr/local/clang18/bin/clang
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /usr/local/clang18/bin/clang accepts -g... yes
checking for /usr/local/clang18/bin/clang option to accept ISO C89... none needed
checking whether we are using the GNU C++ compiler... yes
checking whether /usr/local/clang18/bin/clang++ -std=gnu++17 accepts -g... yes
configure: CXX: /usr/local/clang18/bin/clang++ -std=gnu++17
checking for cmake... cmake
checking for /usr/local/clang18/bin/clang++ -std=gnu++17 option to support OpenMP... -fopenmp
checking for /usr/local/clang18/bin/clang option to support OpenMP... -fopenmp
checking how to run the C preprocessor... /usr/local/clang18/bin/clang -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking fftw3.h usability... yes
checking fftw3.h presence... yes
checking for fftw3.h... yes
checking for library containing fftw_plan_r2r_1d... -lfftw3
configure: Suitable fftw3 library found.
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C++ compiler: ‘clang version 18.1.4’
using C++11
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/bioacoustics/src'
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -std=gnu++11 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c RcppExports.cpp -o RcppExports.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -std=gnu++11 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c bat_bioacoustics.cpp -o bat_bioacoustics.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -std=gnu++11 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c bat_classify.cpp -o bat_classify.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -std=gnu++11 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c bb_analyse.cpp -o bb_analyse.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -std=gnu++11 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c bb_detect.cpp -o bb_detect.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -std=gnu++11 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c bb_extract.cpp -o bb_extract.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -std=gnu++11 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c bc_blob_finder.cpp -o bc_blob_finder.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -std=gnu++11 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c bc_features.cpp -o bc_features.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -std=gnu++11 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c bc_img_processing.cpp -o bc_img_processing.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -std=gnu++11 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c fft.cpp -o fft.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -std=gnu++11 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c read_wac.cpp -o read_wac.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -std=gnu++11 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c spectro.cpp -o spectro.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o bioacoustics.so RcppExports.o bat_bioacoustics.o bat_classify.o bb_analyse.o bb_detect.o bb_extract.o bc_blob_finder.o bc_features.o bc_img_processing.o fft.o read_wac.o spectro.o -lfftw3 -fopenmp
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/bioacoustics/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/bioacoustics/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/bioacoustics/src'
installing to /data/gannet/ripley/R/packages/tests-clang/bioacoustics.Rcheck/00LOCK-bioacoustics/00new/bioacoustics/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bioacoustics)