* installing *source* package ‘bigtabulate’ ... ** package ‘bigtabulate’ successfully unpacked and MD5 sums checked ** using staged installation checking for Sun Studio compiler... no checking for OS... Linux ** libs using C compiler: ‘clang version 18.1.4’ using C++ compiler: ‘clang version 18.1.4’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/bigtabulate/src' /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DLINUX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/bigmemory/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c bigtabulate.cpp -o bigtabulate.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DLINUX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/bigmemory/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c bigtabulate_init.c -o bigtabulate_init.o In file included from bigtabulate.cpp:7: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/shared_ptr.hpp:17: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/shared_ptr.hpp:18: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/detail/shared_count.hpp:27: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27: /data/gannet/ripley/R/test-clang/BH/include/boost/core/checked_delete.hpp:44:5: warning: delete called on non-final 'BreakMapper' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] 44 | delete x; | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/detail/shared_count.hpp:154:20: note: in instantiation of function template specialization 'boost::checked_delete>' requested here 154 | boost::checked_delete( p ); | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/shared_ptr.hpp:280:5: note: in instantiation of function template specialization 'boost::detail::shared_count::shared_count>' requested here 280 | boost::detail::shared_count( p ).swap( pn ); | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/shared_ptr.hpp:374:24: note: in instantiation of function template specialization 'boost::detail::sp_pointer_construct, BreakMapper>' requested here 374 | boost::detail::sp_pointer_construct( this, p, pn ); | ^ bigtabulate.cpp:438:26: note: in instantiation of function template specialization 'boost::shared_ptr>::shared_ptr>' requested here 438 | mappers.push_back( MapperPtr( | ^ bigtabulate.cpp:772:10: note: in instantiation of function template specialization 'TAPPLY>' requested here 772 | return TAPPLY( MatrixAccessor( REAL(numericMatrix), | ^ In file included from bigtabulate.cpp:7: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/shared_ptr.hpp:17: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/shared_ptr.hpp:18: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/detail/shared_count.hpp:27: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27: /data/gannet/ripley/R/test-clang/BH/include/boost/core/checked_delete.hpp:44:5: warning: delete called on non-final 'IndexMapper' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] 44 | delete x; | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/detail/shared_count.hpp:154:20: note: in instantiation of function template specialization 'boost::checked_delete>' requested here 154 | boost::checked_delete( p ); | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/shared_ptr.hpp:280:5: note: in instantiation of function template specialization 'boost::detail::shared_count::shared_count>' requested here 280 | boost::detail::shared_count( p ).swap( pn ); | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/shared_ptr.hpp:374:24: note: in instantiation of function template specialization 'boost::detail::sp_pointer_construct, IndexMapper>' requested here 374 | boost::detail::sp_pointer_construct( this, p, pn ); | ^ bigtabulate.cpp:445:26: note: in instantiation of function template specialization 'boost::shared_ptr>::shared_ptr>' requested here 445 | mappers.push_back( MapperPtr( | ^ bigtabulate.cpp:772:10: note: in instantiation of function template specialization 'TAPPLY>' requested here 772 | return TAPPLY( MatrixAccessor( REAL(numericMatrix), | ^ In file included from bigtabulate.cpp:7: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/shared_ptr.hpp:17: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/shared_ptr.hpp:18: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/detail/shared_count.hpp:27: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27: /data/gannet/ripley/R/test-clang/BH/include/boost/core/checked_delete.hpp:44:5: warning: delete called on non-final 'BreakMapper' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] 44 | delete x; | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/detail/shared_count.hpp:154:20: note: in instantiation of function template specialization 'boost::checked_delete>' requested here 154 | boost::checked_delete( p ); | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/shared_ptr.hpp:280:5: note: in instantiation of function template specialization 'boost::detail::shared_count::shared_count>' requested here 280 | boost::detail::shared_count( p ).swap( pn ); | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/shared_ptr.hpp:374:24: note: in instantiation of function template specialization 'boost::detail::sp_pointer_construct, BreakMapper>' requested here 374 | boost::detail::sp_pointer_construct( this, p, pn ); | ^ bigtabulate.cpp:438:26: note: in instantiation of function template specialization 'boost::shared_ptr>::shared_ptr>' requested here 438 | mappers.push_back( MapperPtr( | ^ bigtabulate.cpp:782:10: note: in instantiation of function template specialization 'TAPPLY>' requested here 782 | return TAPPLY( MatrixAccessor( INTEGER(numericMatrix), | ^ In file included from bigtabulate.cpp:7: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/shared_ptr.hpp:17: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/shared_ptr.hpp:18: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/detail/shared_count.hpp:27: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27: /data/gannet/ripley/R/test-clang/BH/include/boost/core/checked_delete.hpp:44:5: warning: delete called on non-final 'IndexMapper' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] 44 | delete x; | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/detail/shared_count.hpp:154:20: note: in instantiation of function template specialization 'boost::checked_delete>' requested here 154 | boost::checked_delete( p ); | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/shared_ptr.hpp:280:5: note: in instantiation of function template specialization 'boost::detail::shared_count::shared_count>' requested here 280 | boost::detail::shared_count( p ).swap( pn ); | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/shared_ptr.hpp:374:24: note: in instantiation of function template specialization 'boost::detail::sp_pointer_construct, IndexMapper>' requested here 374 | boost::detail::sp_pointer_construct( this, p, pn ); | ^ bigtabulate.cpp:445:26: note: in instantiation of function template specialization 'boost::shared_ptr>::shared_ptr>' requested here 445 | mappers.push_back( MapperPtr( | ^ bigtabulate.cpp:782:10: note: in instantiation of function template specialization 'TAPPLY>' requested here 782 | return TAPPLY( MatrixAccessor( INTEGER(numericMatrix), | ^ 4 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o bigtabulate.so bigtabulate.o bigtabulate_init.o -lrt -lm make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/bigtabulate/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/bigtabulate/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/bigtabulate/src' installing to /data/gannet/ripley/R/packages/tests-clang/bigtabulate.Rcheck/00LOCK-bigtabulate/00new/bigtabulate/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bigtabulate)