* installing *source* package ‘bcv’ ... ** package ‘bcv’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘clang version 18.1.4’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/bcv/src' /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c bcv-matrix-private.c -o bcv-matrix-private.o bcv-matrix-private.c:126:31: warning: variable 'n' set but not used [-Wunused-but-set-variable] 126 | bcv_index_t idx, i, j, m, n, lda; | ^ bcv-matrix-private.c:315:26: warning: variable 'k2' set but not used [-Wunused-but-set-variable] 315 | bcv_index_t m, n, k, k2; | ^ 2 warnings generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c bcv-partition.c -o bcv-partition.o bcv-partition.c:76:30: warning: variable 'k' set but not used [-Wunused-but-set-variable] 76 | bcv_index_t i, m, mc, n, k, *sets; | ^ bcv-partition.c:142:30: warning: variable 'k' set but not used [-Wunused-but-set-variable] 142 | bcv_index_t size = 0, n, k; | ^ 2 warnings generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c bcv-svd-gabriel-rep.c -o bcv-svd-gabriel-rep.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c bcv-svd-gabriel.c -o bcv-svd-gabriel.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c bcv-svd-impute.c -o bcv-svd-impute.o bcv-svd-impute.c:262:23: warning: variable 'i' set but not used [-Wunused-but-set-variable] 262 | bcv_index_t m, n, i, j, idx, incmu; | ^ 1 warning generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c bcv-svd-wold-rep.c -o bcv-svd-wold-rep.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c bcv-svd-wold.c -o bcv-svd-wold.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c bcv-vector-private.c -o bcv-vector-private.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c bcv_init.c -o bcv_init.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c r-cv-svd-gabriel.c -o r-cv-svd-gabriel.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c r-cv-svd-wold.c -o r-cv-svd-wold.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c r-impute-svd.c -o r-impute-svd.o r-impute-svd.c:86:26: warning: variable 'lda' set but not used [-Wunused-but-set-variable] 86 | bcv_index_t i, m, n, lda, result = 0; | ^ r-impute-svd.c:112:26: warning: variable 'lda' set but not used [-Wunused-but-set-variable] 112 | bcv_index_t i, m, n, lda; | ^ 2 warnings generated. /usr/local/clang18/bin/clang -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o bcv.so bcv-matrix-private.o bcv-partition.o bcv-svd-gabriel-rep.o bcv-svd-gabriel.o bcv-svd-impute.o bcv-svd-wold-rep.o bcv-svd-wold.o bcv-vector-private.o bcv_init.o r-cv-svd-gabriel.o r-cv-svd-wold.o r-impute-svd.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortran_main -lFortranRuntime -lFortranDecimal -lm make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/bcv/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/bcv/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/bcv/src' installing to /data/gannet/ripley/R/packages/tests-clang/bcv.Rcheck/00LOCK-bcv/00new/bcv/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bcv)