* installing *source* package ‘bcf’ ... ** package ‘bcf’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘clang version 18.1.4’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/bcf/src' /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -DRCPP_PARALLEL_USE_TBB=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RcppExports.cpp -o RcppExports.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -DRCPP_PARALLEL_USE_TBB=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c TreeSamples.cpp -o TreeSamples.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -DRCPP_PARALLEL_USE_TBB=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c bcf_clean.cpp -o bcf_clean.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -DRCPP_PARALLEL_USE_TBB=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c bcf_clean_overpar.cpp -o bcf_clean_overpar.o bcf_clean_overpar.cpp:106:3: warning: '/*' within block comment [-Wcomment] 106 | /* Read, format y | ^ bcf_clean_overpar.cpp:126:3: warning: '/*' within block comment [-Wcomment] 126 | /* Read, format weights | ^ bcf_clean_overpar.cpp:137:3: warning: '/*' within block comment [-Wcomment] 137 | /* Read, format X_con | ^ bcf_clean_overpar.cpp:162:3: warning: '/*' within block comment [-Wcomment] 162 | /* Read, format X_mod | ^ bcf_clean_overpar.cpp:193:3: warning: '/*' within block comment [-Wcomment] 193 | /* Setup the model | ^ 5 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -DRCPP_PARALLEL_USE_TBB=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c bd.cpp -o bd.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -DRCPP_PARALLEL_USE_TBB=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c funs.cpp -o funs.o funs.cpp:279:16: warning: unused variable 'tbn' [-Wunused-variable] 279 | tree::tree_cp tbn; //the pointer to the bottom node for the current observations | ^~~ funs.cpp:280:9: warning: unused variable 'ni' [-Wunused-variable] 280 | size_t ni; //the index into vector of the current bottom node | ^~ funs.cpp:281:10: warning: unused variable 'xx' [-Wunused-variable] 281 | double *xx; //current x | ^~ funs.cpp:282:9: warning: unused variable 'y' [-Wunused-variable] 282 | double y; //current y | ^ funs.cpp:318:9: warning: variable 'y' set but not used [-Wunused-but-set-variable] 318 | double y; //current y | ^ funs.cpp:324:7: warning: unused variable 'nb' [-Wunused-variable] 324 | bvsz nb = bnv.size(); | ^~ funs.cpp:351:9: warning: variable 'y' set but not used [-Wunused-but-set-variable] 351 | double y; //current y | ^ funs.cpp:354:7: warning: unused variable 'nb' [-Wunused-variable] 354 | bvsz nb = bnv.size(); | ^~ funs.cpp:376:9: warning: variable 'y' set but not used [-Wunused-but-set-variable] 376 | double y; //current y | ^ funs.cpp:404:10: warning: variable 'y' set but not used [-Wunused-but-set-variable] 404 | double y; //current y | ^ 10 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -DRCPP_PARALLEL_USE_TBB=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c logging.cpp -o logging.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -DRCPP_PARALLEL_USE_TBB=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c rng.cpp -o rng.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -DRCPP_PARALLEL_USE_TBB=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c tree.cpp -o tree.o tree.cpp:596:9: warning: variable 'pid' set but not used [-Wunused-but-set-variable] 596 | size_t pid; | ^ tree.cpp:636:9: warning: variable 'pid' set but not used [-Wunused-but-set-variable] 636 | size_t pid; | ^ 2 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o bcf.so RcppExports.o TreeSamples.o bcf_clean.o bcf_clean_overpar.o bd.o funs.o logging.o rng.o tree.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortran_main -lFortranRuntime -lFortranDecimal -lm make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/bcf/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/bcf/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/bcf/src' installing to /data/gannet/ripley/R/packages/tests-clang/bcf.Rcheck/00LOCK-bcf/00new/bcf/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bcf)