* installing *source* package ‘bcf’ ...
** package ‘bcf’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 18.1.4’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/bcf/src'
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -DRCPP_PARALLEL_USE_TBB=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RcppExports.cpp -o RcppExports.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -DRCPP_PARALLEL_USE_TBB=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c TreeSamples.cpp -o TreeSamples.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -DRCPP_PARALLEL_USE_TBB=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c bcf_clean.cpp -o bcf_clean.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -DRCPP_PARALLEL_USE_TBB=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c bcf_clean_overpar.cpp -o bcf_clean_overpar.o
bcf_clean_overpar.cpp:106:3: warning: '/*' within block comment [-Wcomment]
106 | /* Read, format y
| ^
bcf_clean_overpar.cpp:126:3: warning: '/*' within block comment [-Wcomment]
126 | /* Read, format weights
| ^
bcf_clean_overpar.cpp:137:3: warning: '/*' within block comment [-Wcomment]
137 | /* Read, format X_con
| ^
bcf_clean_overpar.cpp:162:3: warning: '/*' within block comment [-Wcomment]
162 | /* Read, format X_mod
| ^
bcf_clean_overpar.cpp:193:3: warning: '/*' within block comment [-Wcomment]
193 | /* Setup the model
| ^
5 warnings generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -DRCPP_PARALLEL_USE_TBB=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c bd.cpp -o bd.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -DRCPP_PARALLEL_USE_TBB=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c funs.cpp -o funs.o
funs.cpp:279:16: warning: unused variable 'tbn' [-Wunused-variable]
279 | tree::tree_cp tbn; //the pointer to the bottom node for the current observations
| ^~~
funs.cpp:280:9: warning: unused variable 'ni' [-Wunused-variable]
280 | size_t ni; //the index into vector of the current bottom node
| ^~
funs.cpp:281:10: warning: unused variable 'xx' [-Wunused-variable]
281 | double *xx; //current x
| ^~
funs.cpp:282:9: warning: unused variable 'y' [-Wunused-variable]
282 | double y; //current y
| ^
funs.cpp:318:9: warning: variable 'y' set but not used [-Wunused-but-set-variable]
318 | double y; //current y
| ^
funs.cpp:324:7: warning: unused variable 'nb' [-Wunused-variable]
324 | bvsz nb = bnv.size();
| ^~
funs.cpp:351:9: warning: variable 'y' set but not used [-Wunused-but-set-variable]
351 | double y; //current y
| ^
funs.cpp:354:7: warning: unused variable 'nb' [-Wunused-variable]
354 | bvsz nb = bnv.size();
| ^~
funs.cpp:376:9: warning: variable 'y' set but not used [-Wunused-but-set-variable]
376 | double y; //current y
| ^
funs.cpp:404:10: warning: variable 'y' set but not used [-Wunused-but-set-variable]
404 | double y; //current y
| ^
10 warnings generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -DRCPP_PARALLEL_USE_TBB=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c logging.cpp -o logging.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -DRCPP_PARALLEL_USE_TBB=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c rng.cpp -o rng.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -DRCPP_PARALLEL_USE_TBB=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c tree.cpp -o tree.o
tree.cpp:596:9: warning: variable 'pid' set but not used [-Wunused-but-set-variable]
596 | size_t pid;
| ^
tree.cpp:636:9: warning: variable 'pid' set but not used [-Wunused-but-set-variable]
636 | size_t pid;
| ^
2 warnings generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o bcf.so RcppExports.o TreeSamples.o bcf_clean.o bcf_clean_overpar.o bd.o funs.o logging.o rng.o tree.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortran_main -lFortranRuntime -lFortranDecimal -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/bcf/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/bcf/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/bcf/src'
installing to /data/gannet/ripley/R/packages/tests-clang/bcf.Rcheck/00LOCK-bcf/00new/bcf/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bcf)