• using R Under development (unstable) (2023-11-24 r85626)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 17.0.5     flang-new version 17.0.5
• running under: Fedora Linux 36 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘astrochron/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘astrochron’ version ‘1.2’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘astrochron’ can be installed ... [50s/67s] OK See the install log for details.
• used C compiler: ‘clang version 17.0.5’
• used Fortran compiler: ‘flang-new version 17.0.5’
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking whether startup messages can be suppressed ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [107s/149s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking usage of KIND in Fortran files ... OK
• checking examples ... ERROR Running examples in ‘astrochron-Ex.R’ failed The error most likely occurred in: > ### Name: asm > ### Title: Average Spectral Misfit > ### Aliases: asm > > ### ** Examples > > ## These frequencies are from modelA (type '?astrochron' for more information). > ## They are for an 8 meter window, centered at 22 meters height. Units are cycles/m . > freq <- c(0.1599833,0.5332776,1.5998329,2.6797201,3.2796575,3.8795948,5.5194235,6.5459830) > freq <- data.frame(freq) > > ## Rayleigh frequency in cycles/m > rayleigh <- 0.1245274 > > ## Nyquist frequency in cycles/m > nyquist <- 6.66597 > > ## orbital target in 1/ky. Predicted periods for 94 Ma (see Meyers et al., 2012) > target <- c(1/405.47,1/126.98,1/96.91,1/37.66,1/22.42,1/18.33) > > ## percent uncertainty in orbital target > fper=c(0.023,0.046,0.042,0.008,0.035,0.004) > > asm(freq=freq,target=target,fper=fper,rayleigh=rayleigh,nyquist=nyquist,sedmin=0.5,sedmax=3, + numsed=100,linLog=1,iter=100000,output=FALSE) ----- PERFORMING AVERAGE SPECTRAL MISFIT ANALYSIS -----  *** caught segfault *** address 0x7ffe0555c6a0, cause 'memory not mapped' Traceback:  1: asm1.8(freq[, 1], numfreq, target[, 1], numtarg, fper[, 1], rayleigh, nyquist, sedmin, sedmax, numsed, linLog, ispecgen, irepl, isetfreq, iter)  2: asm(freq = freq, target = target, fper = fper, rayleigh = rayleigh, nyquist = nyquist, sedmin = 0.5, sedmax = 3, numsed = 100, linLog = 1, iter = 1e+05, output = FALSE) An irrecoverable exception occurred. R is aborting now ...
• checking PDF version of manual ... [16s/21s] OK
• checking HTML version of manual ... [8s/12s] OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR