* using log directory ‘/data/gannet/ripley/R/packages/tests-clang/apsimx.Rcheck’
* using R Under development (unstable) (2024-04-24 r86484)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    clang version 18.1.4
    flang-new version 18.1.4
* running under: Fedora Linux 36 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘apsimx/DESCRIPTION’ ... OK
* this is package ‘apsimx’ version ‘2.6.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘apsimx’ can be installed ... [32s/37s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-clang/apsimx-00install.html' for details.
* checking installed package size ... NOTE
  installed size is  6.9Mb
  sub-directories of 1Mb or more:
    extdata   5.4Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [77s/90s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [70s/94s] OK
  Running ‘test_AK_point_sim.R’
  Running ‘test_apsim_met.R’
  Running ‘test_apsim_met_tt.R’
  Running ‘test_apsim_soils.R’
  Running ‘test_apsim_swim.R’
  Running ‘test_apsimx_factorial.R’
  Running ‘test_classic_examples.r’
  Running ‘test_compare_apsim.R’
  Running ‘test_cores_sens_apsimx.R’
  Running ‘test_edit.R’
  Running ‘test_edit_apsim_replace_soil_profile.R’
  Running ‘test_edit_apsim_xml.R’
  Running ‘test_edit_apsimx_json.R’
  Running ‘test_edit_apsimx_replacement.R’
  Running ‘test_edit_batch.R’
  Running ‘test_examples.R’
  Running ‘test_extract_values_apsimx.R’
  Running ‘test_get_daymet_apsim_met.R’
  Running ‘test_get_gsod_apsim_met.R’
  Running ‘test_get_isric_soil_profile.R’
  Running ‘test_grep_json_list.R’
  Running ‘test_insert_replacement_node.R’
  Running ‘test_inspect.R’
  Running ‘test_inspect_apsim_factorial.R’
  Running ‘test_inspect_apsim_xml.R’
  Running ‘test_inspect_apsimx_json.R’
  Running ‘test_optim_apsimx.R’
  Running ‘test_read_apsim.R’
  Running ‘test_read_apsim_met.R’
  Running ‘test_replacements.R’
  Running ‘test_sens_apsimx.R’
  Running ‘test_soil_properties.R’
  Running ‘test_ssurgo2sp.R’
  Running ‘test_vignette.R’
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [38s/54s] OK
* checking PDF version of manual ... [12s/16s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 NOTE