* installing *source* package ‘WSGeometry’ ... ** package ‘WSGeometry’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘clang version 18.1.4’ using C++11 make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/WSGeometry/src' /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -DARMA_64BIT_WORD -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RcppExports.cpp -o RcppExports.o /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -DARMA_64BIT_WORD -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c bary_sinkhorn_armadillo.cpp -o bary_sinkhorn_armadillo.o /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -DARMA_64BIT_WORD -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c iterative_bary.cpp -o iterative_bary.o /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -DARMA_64BIT_WORD -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c maaipm.cpp -o maaipm.o /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -DARMA_64BIT_WORD -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c umaaipm.cpp -o umaaipm.o In file included from iterative_bary.cpp:6: ./transport_arma.h:93:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 93 | int count=0; | ^ iterative_bary.cpp:61:10: warning: unused variable 'n' [-Wunused-variable] 61 | double n=weightsR.size(); | ^ iterative_bary.cpp:98:7: warning: unused variable 'L' [-Wunused-variable] 98 | int L; | ^ iterative_bary.cpp:99:7: warning: unused variable 'dataCount' [-Wunused-variable] 99 | int dataCount=0; | ^~~~~~~~~ maaipm.cpp:182:10: warning: variable 'relResidual_old_old' set but not used [-Wunused-but-set-variable] 182 | double relResidual_old_old = relResidual_old; | ^ maaipm.cpp:185:10: warning: variable 'rel_gap_old_old' set but not used [-Wunused-but-set-variable] 185 | double rel_gap_old_old = rel_gap_old; | ^ maaipm.cpp:186:10: warning: variable 'optval' set but not used [-Wunused-but-set-variable] 186 | double optval=0; | ^ maaipm.cpp:207:7: warning: unused variable 'L' [-Wunused-variable] 207 | int L=x.n_elem; | ^ maaipm.cpp:415:10: warning: variable 'relResidual_old_old' set but not used [-Wunused-but-set-variable] 415 | double relResidual_old_old = relResidual_old; | ^ maaipm.cpp:418:10: warning: variable 'rel_gap_old_old' set but not used [-Wunused-but-set-variable] 418 | double rel_gap_old_old = rel_gap_old; | ^ maaipm.cpp:419:10: warning: variable 'optval' set but not used [-Wunused-but-set-variable] 419 | double optval=0; | ^ umaaipm.cpp:116:10: warning: variable 'relResidual_old_old' set but not used [-Wunused-but-set-variable] 116 | double relResidual_old_old = relResidual_old; | ^ umaaipm.cpp:119:10: warning: variable 'rel_gap_old_old' set but not used [-Wunused-but-set-variable] 119 | double rel_gap_old_old = rel_gap_old; | ^ umaaipm.cpp:120:10: warning: variable 'optval' set but not used [-Wunused-but-set-variable] 120 | double optval=0; | ^ umaaipm.cpp:361:10: warning: variable 'relResidual_old_old' set but not used [-Wunused-but-set-variable] 361 | double relResidual_old_old = relResidual_old; | ^ umaaipm.cpp:364:10: warning: variable 'rel_gap_old_old' set but not used [-Wunused-but-set-variable] 364 | double rel_gap_old_old = rel_gap_old; | ^ umaaipm.cpp:365:10: warning: variable 'optval' set but not used [-Wunused-but-set-variable] 365 | double optval=0; | ^ umaaipm.cpp:387:7: warning: unused variable 'L' [-Wunused-variable] 387 | int L=x.n_elem; | ^ 4 warnings generated. 7 warnings generated. 7 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++11 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o WSGeometry.so RcppExports.o bary_sinkhorn_armadillo.o iterative_bary.o maaipm.o umaaipm.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortran_main -lFortranRuntime -lFortranDecimal -lm -fopenmp make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/WSGeometry/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/WSGeometry/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/WSGeometry/src' installing to /data/gannet/ripley/R/packages/tests-clang/WSGeometry.Rcheck/00LOCK-WSGeometry/00new/WSGeometry/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (WSGeometry)