* installing *source* package ‘WSGeometry’ ...
** package ‘WSGeometry’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 18.1.4’
using C++11
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/WSGeometry/src'
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -DARMA_64BIT_WORD -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RcppExports.cpp -o RcppExports.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -DARMA_64BIT_WORD -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c bary_sinkhorn_armadillo.cpp -o bary_sinkhorn_armadillo.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -DARMA_64BIT_WORD -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c iterative_bary.cpp -o iterative_bary.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -DARMA_64BIT_WORD -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c maaipm.cpp -o maaipm.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -DARMA_64BIT_WORD -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c umaaipm.cpp -o umaaipm.o
In file included from iterative_bary.cpp:6:
./transport_arma.h:93:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
93 | int count=0;
| ^
iterative_bary.cpp:61:10: warning: unused variable 'n' [-Wunused-variable]
61 | double n=weightsR.size();
| ^
iterative_bary.cpp:98:7: warning: unused variable 'L' [-Wunused-variable]
98 | int L;
| ^
iterative_bary.cpp:99:7: warning: unused variable 'dataCount' [-Wunused-variable]
99 | int dataCount=0;
| ^~~~~~~~~
maaipm.cpp:182:10: warning: variable 'relResidual_old_old' set but not used [-Wunused-but-set-variable]
182 | double relResidual_old_old = relResidual_old;
| ^
maaipm.cpp:185:10: warning: variable 'rel_gap_old_old' set but not used [-Wunused-but-set-variable]
185 | double rel_gap_old_old = rel_gap_old;
| ^
maaipm.cpp:186:10: warning: variable 'optval' set but not used [-Wunused-but-set-variable]
186 | double optval=0;
| ^
maaipm.cpp:207:7: warning: unused variable 'L' [-Wunused-variable]
207 | int L=x.n_elem;
| ^
maaipm.cpp:415:10: warning: variable 'relResidual_old_old' set but not used [-Wunused-but-set-variable]
415 | double relResidual_old_old = relResidual_old;
| ^
maaipm.cpp:418:10: warning: variable 'rel_gap_old_old' set but not used [-Wunused-but-set-variable]
418 | double rel_gap_old_old = rel_gap_old;
| ^
maaipm.cpp:419:10: warning: variable 'optval' set but not used [-Wunused-but-set-variable]
419 | double optval=0;
| ^
umaaipm.cpp:116:10: warning: variable 'relResidual_old_old' set but not used [-Wunused-but-set-variable]
116 | double relResidual_old_old = relResidual_old;
| ^
umaaipm.cpp:119:10: warning: variable 'rel_gap_old_old' set but not used [-Wunused-but-set-variable]
119 | double rel_gap_old_old = rel_gap_old;
| ^
umaaipm.cpp:120:10: warning: variable 'optval' set but not used [-Wunused-but-set-variable]
120 | double optval=0;
| ^
umaaipm.cpp:361:10: warning: variable 'relResidual_old_old' set but not used [-Wunused-but-set-variable]
361 | double relResidual_old_old = relResidual_old;
| ^
umaaipm.cpp:364:10: warning: variable 'rel_gap_old_old' set but not used [-Wunused-but-set-variable]
364 | double rel_gap_old_old = rel_gap_old;
| ^
umaaipm.cpp:365:10: warning: variable 'optval' set but not used [-Wunused-but-set-variable]
365 | double optval=0;
| ^
umaaipm.cpp:387:7: warning: unused variable 'L' [-Wunused-variable]
387 | int L=x.n_elem;
| ^
4 warnings generated.
7 warnings generated.
7 warnings generated.
/usr/local/clang18/bin/clang++ -std=gnu++11 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o WSGeometry.so RcppExports.o bary_sinkhorn_armadillo.o iterative_bary.o maaipm.o umaaipm.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortran_main -lFortranRuntime -lFortranDecimal -lm -fopenmp
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/WSGeometry/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/WSGeometry/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/WSGeometry/src'
installing to /data/gannet/ripley/R/packages/tests-clang/WSGeometry.Rcheck/00LOCK-WSGeometry/00new/WSGeometry/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (WSGeometry)