* installing *source* package ‘VIC5’ ... ** package ‘VIC5’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘clang version 18.1.4’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/VIC5/src' /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/advected_sensible_heat.c -o vic/vic_run/src/advected_sensible_heat.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/alloc_and_free.c -o vic/vic_run/src/alloc_and_free.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/arno_evap.c -o vic/vic_run/src/arno_evap.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/calc_atmos_energy_bal.c -o vic/vic_run/src/calc_atmos_energy_bal.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/calc_gridcell_avg_albedo.c -o vic/vic_run/src/calc_gridcell_avg_albedo.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/calc_Nscale_factors.c -o vic/vic_run/src/calc_Nscale_factors.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/calc_rainonly.c -o vic/vic_run/src/calc_rainonly.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/calc_snow_coverage.c -o vic/vic_run/src/calc_snow_coverage.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/calc_surf_energy_bal.c -o vic/vic_run/src/calc_surf_energy_bal.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/calc_veg_params.c -o vic/vic_run/src/calc_veg_params.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/CalcAerodynamic.c -o vic/vic_run/src/CalcAerodynamic.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/CalcBlowingSnow.c -o vic/vic_run/src/CalcBlowingSnow.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/canopy_assimilation.c -o vic/vic_run/src/canopy_assimilation.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/canopy_evap.c -o vic/vic_run/src/canopy_evap.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/comparisons.c -o vic/vic_run/src/comparisons.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/compute_coszen.c -o vic/vic_run/src/compute_coszen.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/compute_derived_lake_dimensions.c -o vic/vic_run/src/compute_derived_lake_dimensions.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/compute_pot_evap.c -o vic/vic_run/src/compute_pot_evap.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/compute_soil_resp.c -o vic/vic_run/src/compute_soil_resp.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/compute_zwt.c -o vic/vic_run/src/compute_zwt.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/correct_precip.c -o vic/vic_run/src/correct_precip.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/estimate_T1.c -o vic/vic_run/src/estimate_T1.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/faparl.c -o vic/vic_run/src/faparl.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/frozen_soil.c -o vic/vic_run/src/frozen_soil.o vic/vic_run/src/frozen_soil.c:704:76: warning: multi-line // comment [-Wcomment] 704 | //#pragma omp threadprivate(deltat, NOFLUX, EXP_TRANS, T0, moist, ice, \ | ^ vic/vic_run/src/frozen_soil.c:705:71: warning: multi-line // comment [-Wcomment] 705 | kappa, Cs, max_moist, bubble, expt, alpha, beta, gamma, Zsum, Dp, \ | ^ vic/vic_run/src/frozen_soil.c:706:80: warning: multi-line // comment [-Wcomment] 706 | bulk_dens_min, soil_dens_min, quartz, bulk_density, soil_density, organic, \ | ^ vic/vic_run/src/frozen_soil.c:707:77: warning: multi-line // comment [-Wcomment] 707 | depth, Nlayers, Ts, Tb, ice_new, Cs_new, kappa_new, DT, DT_down, DT_up, \ | ^ /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/func_atmos_energy_bal.c -o vic/vic_run/src/func_atmos_energy_bal.o 4 warnings generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/func_atmos_moist_bal.c -o vic/vic_run/src/func_atmos_moist_bal.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/func_canopy_energy_bal.c -o vic/vic_run/src/func_canopy_energy_bal.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/func_surf_energy_bal.c -o vic/vic_run/src/func_surf_energy_bal.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/ice_melt.c -o vic/vic_run/src/ice_melt.o vic/vic_run/src/ice_melt.c:110:30: warning: variable 'melt_energy' set but not used [-Wunused-but-set-variable] 110 | double melt_energy = 0.; | ^ /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/IceEnergyBalance.c -o vic/vic_run/src/IceEnergyBalance.o 1 warning generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/initialize_lake.c -o vic/vic_run/src/initialize_lake.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/interpoloation.c -o vic/vic_run/src/interpoloation.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/lake_utils.c -o vic/vic_run/src/lake_utils.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/lakes.eb.c -o vic/vic_run/src/lakes.eb.o vic/vic_run/src/lakes.eb.c:1326:30: warning: variable 'energyinput' set but not used [-Wunused-but-set-variable] 1326 | double energyinput; | ^ vic/vic_run/src/lakes.eb.c:1328:30: warning: variable 'energymixed' set but not used [-Wunused-but-set-variable] 1328 | double energymixed; | ^ /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/latent_heat_from_snow.c -o vic/vic_run/src/latent_heat_from_snow.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/massrelease.c -o vic/vic_run/src/massrelease.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/newt_raph_func_fast.c -o vic/vic_run/src/newt_raph_func_fast.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/penman.c -o vic/vic_run/src/penman.o 2 warnings generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/photosynth.c -o vic/vic_run/src/photosynth.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/physics.c -o vic/vic_run/src/physics.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/prepare_full_energy.c -o vic/vic_run/src/prepare_full_energy.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/root_brent.c -o vic/vic_run/src/root_brent.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/runoff.c -o vic/vic_run/src/runoff.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/snow_intercept.c -o vic/vic_run/src/snow_intercept.o vic/vic_run/src/runoff.c:53:32: warning: variable 'last_index' set but not used [-Wunused-but-set-variable] 53 | int last_index; | ^ vic/vic_run/src/runoff.c:84:32: warning: variable 'evap_sum' set but not used [-Wunused-but-set-variable] 84 | double evap_sum; | ^ 2 warnings generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/snow_melt.c -o vic/vic_run/src/snow_melt.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/snow_utility.c -o vic/vic_run/src/snow_utility.o vic/vic_run/src/snow_melt.c:106:30: warning: variable 'melt_energy' set but not used [-Wunused-but-set-variable] 106 | double melt_energy = 0.; | ^ /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/SnowPackEnergyBalance.c -o vic/vic_run/src/SnowPackEnergyBalance.o 1 warning generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/soil_carbon_balance.c -o vic/vic_run/src/soil_carbon_balance.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/soil_conduction.c -o vic/vic_run/src/soil_conduction.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/soil_thermal_eqn.c -o vic/vic_run/src/soil_thermal_eqn.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/solve_snow.c -o vic/vic_run/src/solve_snow.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/StabilityCorrection.c -o vic/vic_run/src/StabilityCorrection.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/surface_fluxes.c -o vic/vic_run/src/surface_fluxes.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/svp.c -o vic/vic_run/src/svp.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/vic_run.c -o vic/vic_run/src/vic_run.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/water_energy_balance.c -o vic/vic_run/src/water_energy_balance.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/water_under_ice.c -o vic/vic_run/src/water_under_ice.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/write_layer.c -o vic/vic_run/src/write_layer.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/vic_run/src/write_vegvar.c -o vic/vic_run/src/write_vegvar.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/drivers/shared_all/src/agg_data.c -o vic/drivers/shared_all/src/agg_data.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/drivers/shared_all/src/alarms.c -o vic/drivers/shared_all/src/alarms.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/drivers/shared_all/src/calc_root_fraction.c -o vic/drivers/shared_all/src/calc_root_fraction.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/drivers/shared_all/src/cmd_proc.c -o vic/drivers/shared_all/src/cmd_proc.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/drivers/shared_all/src/compress_files.c -o vic/drivers/shared_all/src/compress_files.o vic/drivers/shared_all/src/compress_files.c:49:9: warning: unused variable 'status' [-Wunused-variable] 49 | int status = system(command); | ^~~~~~ 1 warning generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/drivers/shared_all/src/compute_derived_state_vars.c -o vic/drivers/shared_all/src/compute_derived_state_vars.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/drivers/shared_all/src/compute_lake_params.c -o vic/drivers/shared_all/src/compute_lake_params.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/drivers/shared_all/src/compute_treeline.c -o vic/drivers/shared_all/src/compute_treeline.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/drivers/shared_all/src/forcing_utils.c -o vic/drivers/shared_all/src/forcing_utils.o vic/drivers/shared_all/src/forcing_utils.c:134:19: warning: variable 'status' set but not used [-Wunused-but-set-variable] 134 | char* status; | ^ 1 warning generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/drivers/shared_all/src/free_all_vars.c -o vic/drivers/shared_all/src/free_all_vars.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/drivers/shared_all/src/free_vegcon.c -o vic/drivers/shared_all/src/free_vegcon.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/drivers/shared_all/src/generate_default_lake_state.c -o vic/drivers/shared_all/src/generate_default_lake_state.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/drivers/shared_all/src/generate_default_state.c -o vic/drivers/shared_all/src/generate_default_state.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/drivers/shared_all/src/get_parameters.c -o vic/drivers/shared_all/src/get_parameters.o vic/drivers/shared_all/src/get_parameters.c:37:30: warning: variable 'status' set but not used [-Wunused-but-set-variable] 37 | char* status; | ^ 1 warning generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/drivers/shared_all/src/history_metadata.c -o vic/drivers/shared_all/src/history_metadata.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/drivers/shared_all/src/initialize_energy.c -o vic/drivers/shared_all/src/initialize_energy.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/drivers/shared_all/src/initialize_global.c -o vic/drivers/shared_all/src/initialize_global.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/drivers/shared_all/src/initialize_options.c -o vic/drivers/shared_all/src/initialize_options.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/drivers/shared_all/src/initialize_parameters.c -o vic/drivers/shared_all/src/initialize_parameters.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/drivers/shared_all/src/initialize_snow.c -o vic/drivers/shared_all/src/initialize_snow.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/drivers/shared_all/src/initialize_soil.c -o vic/drivers/shared_all/src/initialize_soil.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/drivers/shared_all/src/initialize_veg.c -o vic/drivers/shared_all/src/initialize_veg.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/drivers/shared_all/src/input_tools.c -o vic/drivers/shared_all/src/input_tools.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/drivers/shared_all/src/make_all_vars.c -o vic/drivers/shared_all/src/make_all_vars.o vic/drivers/shared_all/src/input_tools.c:67:19: warning: variable 'status' set but not used [-Wunused-but-set-variable] 67 | char* status; | ^ 1 warning generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/drivers/shared_all/src/make_cell_data.c -o vic/drivers/shared_all/src/make_cell_data.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/drivers/shared_all/src/make_dmy.c -o vic/drivers/shared_all/src/make_dmy.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/drivers/shared_all/src/make_energy_bal.c -o vic/drivers/shared_all/src/make_energy_bal.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/drivers/shared_all/src/make_snow_data.c -o vic/drivers/shared_all/src/make_snow_data.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/drivers/shared_all/src/make_veg_var.c -o vic/drivers/shared_all/src/make_veg_var.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/drivers/shared_all/src/open_file.c -o vic/drivers/shared_all/src/open_file.o vic/drivers/shared_all/src/open_file.c:56:11: warning: unused variable 'command' [-Wunused-variable] 56 | command[MAXSTRING], | ^~~~~~~ vic/drivers/shared_all/src/open_file.c:58:11: warning: variable 'status' set but not used [-Wunused-but-set-variable] 58 | char* status; | ^ 2 warnings generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/drivers/shared_all/src/print_library_shared.c -o vic/drivers/shared_all/src/print_library_shared.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/drivers/shared_all/src/put_data.c -o vic/drivers/shared_all/src/put_data.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/drivers/shared_all/src/set_output_defaults.c -o vic/drivers/shared_all/src/set_output_defaults.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/drivers/shared_all/src/soil_moisture_from_water_table.c -o vic/drivers/shared_all/src/soil_moisture_from_water_table.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/drivers/shared_all/src/timing.c -o vic/drivers/shared_all/src/timing.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/drivers/shared_all/src/update_step_vars.c -o vic/drivers/shared_all/src/update_step_vars.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/drivers/shared_all/src/vic_history.c -o vic/drivers/shared_all/src/vic_history.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/drivers/shared_all/src/vic_log.c -o vic/drivers/shared_all/src/vic_log.o vic/drivers/shared_all/src/vic_log.c:92:11: warning: unused variable 'ext' [-Wunused-variable] 92 | char *ext = ".txt"; | ^~~ vic/drivers/shared_all/src/vic_log.c:93:11: warning: unused variable 'prefix' [-Wunused-variable] 93 | char *prefix = "vic.log."; | ^~~~~~ 2 warnings generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/drivers/shared_all/src/vic_time.c -o vic/drivers/shared_all/src/vic_time.o vic/drivers/shared_all/src/vic_time.c:122:14: warning: variable 'B' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized] 122 | else if (calendar == CALENDAR_JULIAN) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ vic/drivers/shared_all/src/vic_time.c:131:11: note: uninitialized use occurs here 131 | jd += B; | ^ vic/drivers/shared_all/src/vic_time.c:122:10: note: remove the 'if' if its condition is always true 122 | else if (calendar == CALENDAR_JULIAN) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 | B = 0; 124 | } | 125 | else { | ~~~~~~ 126 | log_err("unknown calendar, must be one of julian,standard,gregorian," | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 | "proleptic_gregoria"); | ~~~~~~~~~~~~~~~~~~~~~~ 128 | } | ~ vic/drivers/shared_all/src/vic_time.c:110:18: warning: variable 'B' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized] 110 | else if (jd < 2299160.5) { | ^~~~~~~~~~~~~~ vic/drivers/shared_all/src/vic_time.c:131:11: note: uninitialized use occurs here 131 | jd += B; | ^ vic/drivers/shared_all/src/vic_time.c:110:14: note: remove the 'if' if its condition is always true 110 | else if (jd < 2299160.5) { | ^~~~~~~~~~~~~~~~~~~ 111 | // 1582 October 5 (Julian Calendar) 112 | B = 0; 113 | } | 114 | else { | ~~~~~~ 115 | log_err("impossible date (falls in gap between end of Julian " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 | "calendar and beginning of Gregorian calendar"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 | } | ~ vic/drivers/shared_all/src/vic_time.c:81:16: note: initialize the variable 'B' to silence this warning 81 | int A, B; | ^ | = 0 vic/drivers/shared_all/src/vic_time.c:273:14: warning: variable 'A' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized] 273 | else if (calendar == CALENDAR_JULIAN) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ vic/drivers/shared_all/src/vic_time.c:281:9: note: uninitialized use occurs here 281 | B = A + 1524; | ^ vic/drivers/shared_all/src/vic_time.c:273:10: note: remove the 'if' if its condition is always true 273 | else if (calendar == CALENDAR_JULIAN) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 | A = Z; 275 | } | 276 | else { | ~~~~~~ 277 | log_err("unknown calendar, must be one of julian,standard,gregorian," | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 | "proleptic_gregorian"); | ~~~~~~~~~~~~~~~~~~~~~~~ 279 | } | ~ vic/drivers/shared_all/src/vic_time.c:247:13: note: initialize the variable 'A' to silence this warning 247 | int A, B, C, D, E; | ^ | = 0 vic/drivers/shared_all/src/vic_time.c:585:14: warning: variable 'jdelta' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized] 585 | else if (time_units == TIME_UNITS_DAYS) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ vic/drivers/shared_all/src/vic_time.c:593:10: note: uninitialized use occurs here 593 | jd = jdelta + origin + small_offset; | ^~~~~~ vic/drivers/shared_all/src/vic_time.c:585:10: note: remove the 'if' if its condition is always true 585 | else if (time_units == TIME_UNITS_DAYS) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 | jdelta = time_value - tzoffset / HOURS_PER_DAY; 587 | } | 588 | else { | ~~~~~~ 589 | log_err("Unknown Time Units Flag: %hu", time_units); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 | } | ~ vic/drivers/shared_all/src/vic_time.c:574:22: note: initialize the variable 'jdelta' to silence this warning 574 | double jd, jdelta; | ^ | = 0.0 4 warnings generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vic/drivers/shared_all/src/zero_output_list.c -o vic/drivers/shared_all/src/zero_output_list.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c conv.cpp -o conv.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c display_current_settings.cpp -o display_current_settings.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c force.cpp -o force.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c get_options.cpp -o get_options.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c globals.cpp -o globals.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c initiate.cpp -o initiate.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c make_output_info.cpp -o make_output_info.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c make_params.cpp -o make_params.o make_params.cpp:10:8: warning: variable 'run_cell' set but not used [-Wunused-but-set-variable] 10 | bool run_cell; | ^ make_params.cpp:750:31: warning: variable 'skip' set but not used [-Wunused-but-set-variable] 750 | int i, skip, veg_class, offset; | ^ /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RcppExports.cpp -o RcppExports.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c vic_run_cell.cpp -o vic_run_cell.o 2 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c vic_version.cpp -o vic_version.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c vic_run_cells_all.cpp -o vic_run_cells_all.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c XAJ.cpp -o XAJ.o /usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o VIC5.so vic/vic_run/src/advected_sensible_heat.o vic/vic_run/src/alloc_and_free.o vic/vic_run/src/arno_evap.o vic/vic_run/src/calc_atmos_energy_bal.o vic/vic_run/src/calc_gridcell_avg_albedo.o vic/vic_run/src/calc_Nscale_factors.o vic/vic_run/src/calc_rainonly.o vic/vic_run/src/calc_snow_coverage.o vic/vic_run/src/calc_surf_energy_bal.o vic/vic_run/src/calc_veg_params.o vic/vic_run/src/CalcAerodynamic.o vic/vic_run/src/CalcBlowingSnow.o vic/vic_run/src/canopy_assimilation.o vic/vic_run/src/canopy_evap.o vic/vic_run/src/comparisons.o vic/vic_run/src/compute_coszen.o vic/vic_run/src/compute_derived_lake_dimensions.o vic/vic_run/src/compute_pot_evap.o vic/vic_run/src/compute_soil_resp.o vic/vic_run/src/compute_zwt.o vic/vic_run/src/correct_precip.o vic/vic_run/src/estimate_T1.o vic/vic_run/src/faparl.o vic/vic_run/src/frozen_soil.o vic/vic_run/src/func_atmos_energy_bal.o vic/vic_run/src/func_atmos_moist_bal.o vic/vic_run/src/func_canopy_energy_bal.o vic/vic_run/src/func_surf_energy_bal.o vic/vic_run/src/ice_melt.o vic/vic_run/src/IceEnergyBalance.o vic/vic_run/src/initialize_lake.o vic/vic_run/src/interpoloation.o vic/vic_run/src/lake_utils.o vic/vic_run/src/lakes.eb.o vic/vic_run/src/latent_heat_from_snow.o vic/vic_run/src/massrelease.o vic/vic_run/src/newt_raph_func_fast.o vic/vic_run/src/penman.o vic/vic_run/src/photosynth.o vic/vic_run/src/physics.o vic/vic_run/src/prepare_full_energy.o vic/vic_run/src/root_brent.o vic/vic_run/src/runoff.o vic/vic_run/src/snow_intercept.o vic/vic_run/src/snow_melt.o vic/vic_run/src/snow_utility.o vic/vic_run/src/SnowPackEnergyBalance.o vic/vic_run/src/soil_carbon_balance.o vic/vic_run/src/soil_conduction.o vic/vic_run/src/soil_thermal_eqn.o vic/vic_run/src/solve_snow.o vic/vic_run/src/StabilityCorrection.o vic/vic_run/src/surface_fluxes.o vic/vic_run/src/svp.o vic/vic_run/src/vic_run.o vic/vic_run/src/water_energy_balance.o vic/vic_run/src/water_under_ice.o vic/vic_run/src/write_layer.o vic/vic_run/src/write_vegvar.o vic/drivers/shared_all/src/agg_data.o vic/drivers/shared_all/src/alarms.o vic/drivers/shared_all/src/calc_root_fraction.o vic/drivers/shared_all/src/cmd_proc.o vic/drivers/shared_all/src/compress_files.o vic/drivers/shared_all/src/compute_derived_state_vars.o vic/drivers/shared_all/src/compute_lake_params.o vic/drivers/shared_all/src/compute_treeline.o vic/drivers/shared_all/src/forcing_utils.o vic/drivers/shared_all/src/free_all_vars.o vic/drivers/shared_all/src/free_vegcon.o vic/drivers/shared_all/src/generate_default_lake_state.o vic/drivers/shared_all/src/generate_default_state.o vic/drivers/shared_all/src/get_parameters.o vic/drivers/shared_all/src/history_metadata.o vic/drivers/shared_all/src/initialize_energy.o vic/drivers/shared_all/src/initialize_global.o vic/drivers/shared_all/src/initialize_options.o vic/drivers/shared_all/src/initialize_parameters.o vic/drivers/shared_all/src/initialize_snow.o vic/drivers/shared_all/src/initialize_soil.o vic/drivers/shared_all/src/initialize_veg.o vic/drivers/shared_all/src/input_tools.o vic/drivers/shared_all/src/make_all_vars.o vic/drivers/shared_all/src/make_cell_data.o vic/drivers/shared_all/src/make_dmy.o vic/drivers/shared_all/src/make_energy_bal.o vic/drivers/shared_all/src/make_snow_data.o vic/drivers/shared_all/src/make_veg_var.o vic/drivers/shared_all/src/open_file.o vic/drivers/shared_all/src/print_library_shared.o vic/drivers/shared_all/src/put_data.o vic/drivers/shared_all/src/set_output_defaults.o vic/drivers/shared_all/src/soil_moisture_from_water_table.o vic/drivers/shared_all/src/timing.o vic/drivers/shared_all/src/update_step_vars.o vic/drivers/shared_all/src/vic_history.o vic/drivers/shared_all/src/vic_log.o vic/drivers/shared_all/src/vic_time.o vic/drivers/shared_all/src/zero_output_list.o ./conv.o ./display_current_settings.o ./force.o ./get_options.o ./globals.o ./initiate.o ./make_output_info.o ./make_params.o ./RcppExports.o ./vic_run_cell.o ./vic_version.o vic_run_cells_all.o XAJ.o -fopenmp -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortran_main -lFortranRuntime -lFortranDecimal -lm make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/VIC5/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/VIC5/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/VIC5/src' installing to /data/gannet/ripley/R/packages/tests-clang/VIC5.Rcheck/00LOCK-VIC5/00new/VIC5/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (VIC5)