* installing *source* package ‘VAJointSurv’ ...
** package ‘VAJointSurv’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 18.1.4’
using C++17
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/VAJointSurv/src'
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -I'/data/gannet/ripley/R/test-clang/psqn/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -fopenmp -DPSQN_USE_EIGEN -DPSQN_W_LAPACK  -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c R-interface.cpp -o R-interface.o
In file included from R-interface.cpp:1:
In file included from ./arma-eigen-wrap.h:10:
In file included from ./arma-wrap.h:16:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo:26:
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:321:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages]
  321 |   #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
      |           ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:326:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages]
  326 |     #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
      |             ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:329:11: warning: INFO: see the documentation for details [-W#pragma-messages]
  329 |   #pragma message ("INFO: see the documentation for details")
      |           ^
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -I'/data/gannet/ripley/R/test-clang/psqn/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -fopenmp -DPSQN_USE_EIGEN -DPSQN_W_LAPACK  -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from ./VAJointSurv_types.h:1:
In file included from ./arma-eigen-wrap.h:10:
In file included from ./arma-wrap.h:16:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo:26:
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:321:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages]
  321 |   #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
      |           ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:326:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages]
  326 |     #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
      |             ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:329:11: warning: INFO: see the documentation for details [-W#pragma-messages]
  329 |   #pragma message ("INFO: see the documentation for details")
      |           ^
In file included from R-interface.cpp:1:
In file included from ./arma-eigen-wrap.h:21:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from R-interface.cpp:1:
In file included from ./arma-eigen-wrap.h:21:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from R-interface.cpp:1:
In file included from ./arma-eigen-wrap.h:21:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
   72 |                         Index replacements = 0;
      |                               ^
In file included from R-interface.cpp:1:
In file included from ./arma-eigen-wrap.h:21:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  246 |   int count = 0;
      |       ^
In file included from R-interface.cpp:13:
./ghq-delayed-entry.h:90:10: warning: class 'eval_data' was previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   90 |   friend class eval_data;
      |          ^
./ghq-delayed-entry.h:89:10: note: previous use is here
   89 |   struct eval_data;
      |          ^
./ghq-delayed-entry.h:181:10: warning: class 'impl' was previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
  181 |   friend class impl;
      |          ^
./ghq-delayed-entry.h:180:10: note: previous use is here
  180 |   struct impl;
      |          ^
In file included from RcppExports.cpp:4:
In file included from ./VAJointSurv_types.h:1:
In file included from ./arma-eigen-wrap.h:21:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from RcppExports.cpp:4:
In file included from ./VAJointSurv_types.h:1:
In file included from ./arma-eigen-wrap.h:21:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from RcppExports.cpp:4:
In file included from ./VAJointSurv_types.h:1:
In file included from ./arma-eigen-wrap.h:21:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
   72 |                         Index replacements = 0;
      |                               ^
In file included from RcppExports.cpp:4:
In file included from ./VAJointSurv_types.h:1:
In file included from ./arma-eigen-wrap.h:21:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  246 |   int count = 0;
      |       ^
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -I'/data/gannet/ripley/R/test-clang/psqn/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -fopenmp -DPSQN_USE_EIGEN -DPSQN_W_LAPACK  -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c VA-parameter.cpp -o VA-parameter.o
8 warnings generated.
In file included from R-interface.cpp:2:
In file included from ./marker-term.h:6:
In file included from ./bases.h:9:
In file included from ./wmem.h:5:
In file included from ./cfaad/AAD.h:36:
In file included from ./cfaad/AADNumWrapper.h:4:
In file included from ./cfaad/AADExpr.h:38:
./cfaad/AADTape.h:70:41: warning: private field 'myPad' is not used [-Wunused-private-field]
   70 |     char                                myPad[64];
      |                                         ^
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -I'/data/gannet/ripley/R/test-clang/psqn/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -fopenmp -DPSQN_USE_EIGEN -DPSQN_W_LAPACK  -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c bases.cpp -o bases.o
11 warnings generated.
In file included from bases.cpp:1:
In file included from ./bases.h:4:
In file included from ./arma-wrap.h:16:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo:26:
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:321:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages]
  321 |   #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
      |           ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:326:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages]
  326 |     #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
      |             ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:329:11: warning: INFO: see the documentation for details [-W#pragma-messages]
  329 |   #pragma message ("INFO: see the documentation for details")
      |           ^
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -I'/data/gannet/ripley/R/test-clang/psqn/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -fopenmp -DPSQN_USE_EIGEN -DPSQN_W_LAPACK  -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c ghq-delayed-entry.cpp -o ghq-delayed-entry.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -I'/data/gannet/ripley/R/test-clang/psqn/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -fopenmp -DPSQN_USE_EIGEN -DPSQN_W_LAPACK  -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c ghq.cpp -o ghq.o
In file included from ghq-delayed-entry.cpp:1:
In file included from ./ghq-delayed-entry.h:1:
In file included from ./ghq.h:5:
In file included from ./arma-wrap.h:16:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo:26:
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:321:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages]
  321 |   #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
      |           ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:326:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages]
  326 |     #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
      |             ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:329:11: warning: INFO: see the documentation for details [-W#pragma-messages]
  329 |   #pragma message ("INFO: see the documentation for details")
      |           ^
In file included from bases.cpp:1:
In file included from ./bases.h:9:
In file included from ./wmem.h:5:
In file included from ./cfaad/AAD.h:36:
In file included from ./cfaad/AADNumWrapper.h:4:
In file included from ./cfaad/AADExpr.h:38:
./cfaad/AADTape.h:70:41: warning: private field 'myPad' is not used [-Wunused-private-field]
   70 |     char                                myPad[64];
      |                                         ^
In file included from ghq.cpp:1:
In file included from ./ghq.h:5:
In file included from ./arma-wrap.h:16:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo:26:
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:321:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages]
  321 |   #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
      |           ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:326:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages]
  326 |     #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
      |             ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:329:11: warning: INFO: see the documentation for details [-W#pragma-messages]
  329 |   #pragma message ("INFO: see the documentation for details")
      |           ^
4 warnings generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -I'/data/gannet/ripley/R/test-clang/psqn/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -fopenmp -DPSQN_USE_EIGEN -DPSQN_W_LAPACK  -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c init.cpp -o init.o
In file included from init.cpp:1:
In file included from ./cfaad/AADInit.hpp:32:
In file included from ./cfaad/AAD.h:36:
In file included from ./cfaad/AADNumWrapper.h:4:
In file included from ./cfaad/AADExpr.h:38:
./cfaad/AADTape.h:70:41: warning: private field 'myPad' is not used [-Wunused-private-field]
   70 |     char                                myPad[64];
      |                                         ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -I'/data/gannet/ripley/R/test-clang/psqn/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -fopenmp -DPSQN_USE_EIGEN -DPSQN_W_LAPACK  -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c integrand-expected-survival.cpp -o integrand-expected-survival.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -I'/data/gannet/ripley/R/test-clang/psqn/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -fopenmp -DPSQN_USE_EIGEN -DPSQN_W_LAPACK  -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c kl-term.cpp -o kl-term.o
In file included from integrand-expected-survival.cpp:1:
In file included from ./integrand-expected-survival.h:4:
In file included from ./ghq.h:5:
In file included from ./arma-wrap.h:16:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo:26:
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:321:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages]
  321 |   #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
      |           ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:326:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages]
  326 |     #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
      |             ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:329:11: warning: INFO: see the documentation for details [-W#pragma-messages]
  329 |   #pragma message ("INFO: see the documentation for details")
      |           ^
In file included from ghq-delayed-entry.cpp:1:
./ghq-delayed-entry.h:90:10: warning: class 'eval_data' was previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   90 |   friend class eval_data;
      |          ^
./ghq-delayed-entry.h:89:10: note: previous use is here
   89 |   struct eval_data;
      |          ^
./ghq-delayed-entry.h:181:10: warning: class 'impl' was previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
  181 |   friend class impl;
      |          ^
./ghq-delayed-entry.h:180:10: note: previous use is here
  180 |   struct impl;
      |          ^
In file included from kl-term.cpp:1:
In file included from ./kl-term.h:7:
In file included from ./arma-wrap.h:16:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo:26:
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:321:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages]
  321 |   #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
      |           ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:326:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages]
  326 |     #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
      |             ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:329:11: warning: INFO: see the documentation for details [-W#pragma-messages]
  329 |   #pragma message ("INFO: see the documentation for details")
      |           ^
In file included from ghq-delayed-entry.cpp:1:
In file included from ./ghq-delayed-entry.h:3:
In file included from ./bases.h:9:
In file included from ./wmem.h:5:
In file included from ./cfaad/AAD.h:36:
In file included from ./cfaad/AADNumWrapper.h:4:
In file included from ./cfaad/AADExpr.h:38:
./cfaad/AADTape.h:70:41: warning: private field 'myPad' is not used [-Wunused-private-field]
   70 |     char                                myPad[64];
      |                                         ^
In file included from ghq-delayed-entry.cpp:1:
./ghq-delayed-entry.h:72:16: warning: private field 'n_fixef' is not used [-Wunused-private-field]
   72 |   vajoint_uint n_fixef;
      |                ^
7 warnings generated.
3 warnings generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -I'/data/gannet/ripley/R/test-clang/psqn/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -fopenmp -DPSQN_USE_EIGEN -DPSQN_W_LAPACK  -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c marker-term.cpp -o marker-term.o
In file included from marker-term.cpp:1:
In file included from ./marker-term.h:6:
In file included from ./bases.h:4:
In file included from ./arma-wrap.h:16:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo:26:
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:321:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages]
  321 |   #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
      |           ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:326:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages]
  326 |     #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
      |             ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:329:11: warning: INFO: see the documentation for details [-W#pragma-messages]
  329 |   #pragma message ("INFO: see the documentation for details")
      |           ^
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -I'/data/gannet/ripley/R/test-clang/psqn/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -fopenmp -DPSQN_USE_EIGEN -DPSQN_W_LAPACK  -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c test-VA-parameter.cpp -o test-VA-parameter.o
3 warnings generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -I'/data/gannet/ripley/R/test-clang/psqn/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -fopenmp -DPSQN_USE_EIGEN -DPSQN_W_LAPACK  -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c test-bases.cpp -o test-bases.o
In file included from kl-term.cpp:1:
In file included from ./kl-term.h:8:
In file included from ./wmem.h:5:
In file included from ./cfaad/AAD.h:36:
In file included from ./cfaad/AADNumWrapper.h:4:
In file included from ./cfaad/AADExpr.h:38:
./cfaad/AADTape.h:70:41: warning: private field 'myPad' is not used [-Wunused-private-field]
   70 |     char                                myPad[64];
      |                                         ^
4 warnings generated.
In file included from test-bases.cpp:2:
In file included from ./bases.h:4:
In file included from ./arma-wrap.h:16:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo:26:
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:321:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages]
  321 |   #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
      |           ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:326:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages]
  326 |     #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
      |             ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:329:11: warning: INFO: see the documentation for details [-W#pragma-messages]
  329 |   #pragma message ("INFO: see the documentation for details")
      |           ^
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -I'/data/gannet/ripley/R/test-clang/psqn/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -fopenmp -DPSQN_USE_EIGEN -DPSQN_W_LAPACK  -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c test-ghq-delayed-entry.cpp -o test-ghq-delayed-entry.o
In file included from test-ghq-delayed-entry.cpp:2:
In file included from ./ghq-delayed-entry.h:1:
In file included from ./ghq.h:5:
In file included from ./arma-wrap.h:16:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo:26:
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:321:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages]
  321 |   #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
      |           ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:326:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages]
  326 |     #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
      |             ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:329:11: warning: INFO: see the documentation for details [-W#pragma-messages]
  329 |   #pragma message ("INFO: see the documentation for details")
      |           ^
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -I'/data/gannet/ripley/R/test-clang/psqn/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -fopenmp -DPSQN_USE_EIGEN -DPSQN_W_LAPACK  -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c test-integrand-expected-survival.cpp -o test-integrand-expected-survival.o
In file included from marker-term.cpp:1:
In file included from ./marker-term.h:6:
In file included from ./bases.h:9:
In file included from ./wmem.h:5:
In file included from ./cfaad/AAD.h:36:
In file included from ./cfaad/AADNumWrapper.h:4:
In file included from ./cfaad/AADExpr.h:38:
./cfaad/AADTape.h:70:41: warning: private field 'myPad' is not used [-Wunused-private-field]
   70 |     char                                myPad[64];
      |                                         ^
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -I'/data/gannet/ripley/R/test-clang/psqn/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -fopenmp -DPSQN_USE_EIGEN -DPSQN_W_LAPACK  -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c test-kl-term.cpp -o test-kl-term.o
4 warnings generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -I'/data/gannet/ripley/R/test-clang/psqn/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -fopenmp -DPSQN_USE_EIGEN -DPSQN_W_LAPACK  -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c test-log-cholesky.cpp -o test-log-cholesky.o
In file included from test-integrand-expected-survival.cpp:2:
In file included from ./integrand-expected-survival.h:4:
In file included from ./ghq.h:5:
In file included from ./arma-wrap.h:16:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo:26:
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:321:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages]
  321 |   #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
      |           ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:326:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages]
  326 |     #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
      |             ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:329:11: warning: INFO: see the documentation for details [-W#pragma-messages]
  329 |   #pragma message ("INFO: see the documentation for details")
      |           ^
In file included from test-log-cholesky.cpp:2:
In file included from ./log-cholesky.h:4:
In file included from ./arma-wrap.h:16:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo:26:
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:321:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages]
  321 |   #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
      |           ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:326:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages]
  326 |     #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
      |             ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:329:11: warning: INFO: see the documentation for details [-W#pragma-messages]
  329 |   #pragma message ("INFO: see the documentation for details")
      |           ^
In file included from test-kl-term.cpp:2:
In file included from ./kl-term.h:7:
In file included from ./arma-wrap.h:16:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo:26:
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:321:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages]
  321 |   #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
      |           ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:326:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages]
  326 |     #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
      |             ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:329:11: warning: INFO: see the documentation for details [-W#pragma-messages]
  329 |   #pragma message ("INFO: see the documentation for details")
      |           ^
In file included from test-bases.cpp:2:
In file included from ./bases.h:9:
In file included from ./wmem.h:5:
In file included from ./cfaad/AAD.h:36:
In file included from ./cfaad/AADNumWrapper.h:4:
In file included from ./cfaad/AADExpr.h:38:
./cfaad/AADTape.h:70:41: warning: private field 'myPad' is not used [-Wunused-private-field]
   70 |     char                                myPad[64];
      |                                         ^
In file included from test-ghq-delayed-entry.cpp:2:
./ghq-delayed-entry.h:90:10: warning: class 'eval_data' was previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   90 |   friend class eval_data;
      |          ^
./ghq-delayed-entry.h:89:10: note: previous use is here
   89 |   struct eval_data;
      |          ^
./ghq-delayed-entry.h:181:10: warning: class 'impl' was previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
  181 |   friend class impl;
      |          ^
./ghq-delayed-entry.h:180:10: note: previous use is here
  180 |   struct impl;
      |          ^
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -I'/data/gannet/ripley/R/test-clang/psqn/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -fopenmp -DPSQN_USE_EIGEN -DPSQN_W_LAPACK  -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c test-lp-joint.cpp -o test-lp-joint.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -I'/data/gannet/ripley/R/test-clang/psqn/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -fopenmp -DPSQN_USE_EIGEN -DPSQN_W_LAPACK  -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c test-marker-term.cpp -o test-marker-term.o
In file included from test-ghq-delayed-entry.cpp:2:
In file included from ./ghq-delayed-entry.h:3:
In file included from ./bases.h:9:
In file included from ./wmem.h:5:
In file included from ./cfaad/AAD.h:36:
In file included from ./cfaad/AADNumWrapper.h:4:
In file included from ./cfaad/AADExpr.h:38:
./cfaad/AADTape.h:70:41: warning: private field 'myPad' is not used [-Wunused-private-field]
   70 |     char                                myPad[64];
      |                                         ^
4 warnings generated.
In file included from test-marker-term.cpp:1:
In file included from ./marker-term.h:6:
In file included from ./bases.h:4:
In file included from ./arma-wrap.h:16:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo:26:
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:321:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages]
  321 |   #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
      |           ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:326:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages]
  326 |     #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
      |             ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:329:11: warning: INFO: see the documentation for details [-W#pragma-messages]
  329 |   #pragma message ("INFO: see the documentation for details")
      |           ^
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -I'/data/gannet/ripley/R/test-clang/psqn/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -fopenmp -DPSQN_USE_EIGEN -DPSQN_W_LAPACK  -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c test-runner.cpp -o test-runner.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -I'/data/gannet/ripley/R/test-clang/psqn/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -fopenmp -DPSQN_USE_EIGEN -DPSQN_W_LAPACK  -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c test-survival-term.cpp -o test-survival-term.o
3 warnings generated.
In file included from test-log-cholesky.cpp:2:
In file included from ./log-cholesky.h:7:
In file included from ./wmem.h:5:
In file included from ./cfaad/AAD.h:36:
In file included from ./cfaad/AADNumWrapper.h:4:
In file included from ./cfaad/AADExpr.h:38:
./cfaad/AADTape.h:70:41: warning: private field 'myPad' is not used [-Wunused-private-field]
   70 |     char                                myPad[64];
      |                                         ^
In file included from test-survival-term.cpp:1:
In file included from ./survival-term.h:5:
In file included from ./bases.h:4:
In file included from ./arma-wrap.h:16:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo:26:
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:321:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages]
  321 |   #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
      |           ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:326:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages]
  326 |     #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
      |             ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:329:11: warning: INFO: see the documentation for details [-W#pragma-messages]
  329 |   #pragma message ("INFO: see the documentation for details")
      |           ^
4 warnings generated.
6 warnings generated.
In file included from test-kl-term.cpp:2:
In file included from ./kl-term.h:8:
In file included from ./wmem.h:5:
In file included from ./cfaad/AAD.h:36:
In file included from ./cfaad/AADNumWrapper.h:4:
In file included from ./cfaad/AADExpr.h:38:
./cfaad/AADTape.h:70:41: warning: private field 'myPad' is not used [-Wunused-private-field]
   70 |     char                                myPad[64];
      |                                         ^
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -I'/data/gannet/ripley/R/test-clang/psqn/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -fopenmp -DPSQN_USE_EIGEN -DPSQN_W_LAPACK  -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c wmem.cpp -o wmem.o
4 warnings generated.
In file included from wmem.cpp:1:
In file included from ./wmem.h:5:
In file included from ./cfaad/AAD.h:36:
In file included from ./cfaad/AADNumWrapper.h:4:
In file included from ./cfaad/AADExpr.h:38:
./cfaad/AADTape.h:70:41: warning: private field 'myPad' is not used [-Wunused-private-field]
   70 |     char                                myPad[64];
      |                                         ^
1 warning generated.
In file included from test-marker-term.cpp:1:
In file included from ./marker-term.h:6:
In file included from ./bases.h:9:
In file included from ./wmem.h:5:
In file included from ./cfaad/AAD.h:36:
In file included from ./cfaad/AADNumWrapper.h:4:
In file included from ./cfaad/AADExpr.h:38:
./cfaad/AADTape.h:70:41: warning: private field 'myPad' is not used [-Wunused-private-field]
   70 |     char                                myPad[64];
      |                                         ^
4 warnings generated.
In file included from test-survival-term.cpp:1:
In file included from ./survival-term.h:5:
In file included from ./bases.h:9:
In file included from ./wmem.h:5:
In file included from ./cfaad/AAD.h:36:
In file included from ./cfaad/AADNumWrapper.h:4:
In file included from ./cfaad/AADExpr.h:38:
./cfaad/AADTape.h:70:41: warning: private field 'myPad' is not used [-Wunused-private-field]
   70 |     char                                myPad[64];
      |                                         ^
4 warnings generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o VAJointSurv.so R-interface.o RcppExports.o VA-parameter.o bases.o ghq-delayed-entry.o ghq.o init.o integrand-expected-survival.o kl-term.o marker-term.o test-VA-parameter.o test-bases.o test-ghq-delayed-entry.o test-integrand-expected-survival.o test-kl-term.o test-log-cholesky.o test-lp-joint.o test-marker-term.o test-runner.o test-survival-term.o wmem.o -fopenmp -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortran_main -lFortranRuntime -lFortranDecimal -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/VAJointSurv/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/VAJointSurv/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/VAJointSurv/src'
installing to /data/gannet/ripley/R/packages/tests-clang/VAJointSurv.Rcheck/00LOCK-VAJointSurv/00new/VAJointSurv/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (VAJointSurv)