* installing *source* package ‘TreeDist’ ...
** package ‘TreeDist’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 18.1.4’
using C++17
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/TreeDist/src'
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/TreeTools/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c RcppExports.cpp -o RcppExports.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/TreeTools/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c day_1985.cpp -o day_1985.o
In file included from day_1985.cpp:4:
In file included from ./tree_distances.h:9:
./ints.h:11:21: warning: extension used [-Wlanguage-extension-token]
   11 | typedef std::vector<typeof(NA_INTEGER)> grf_match;
      |                     ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/TreeTools/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c lap.cpp -o lap.o
In file included from lap.cpp:27:
In file included from ./tree_distances.h:9:
./ints.h:11:21: warning: extension used [-Wlanguage-extension-token]
   11 | typedef std::vector<typeof(NA_INTEGER)> grf_match;
      |                     ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/TreeTools/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c mast.cpp -o mast.o
In file included from mast.cpp:3:
./ints.h:11:21: warning: extension used [-Wlanguage-extension-token]
   11 | typedef std::vector<typeof(NA_INTEGER)> grf_match;
      |                     ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/TreeTools/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c nni_distance.cpp -o nni_distance.o
In file included from nni_distance.cpp:6:
In file included from ./tree_distances.h:9:
./ints.h:11:21: warning: extension used [-Wlanguage-extension-token]
   11 | typedef std::vector<typeof(NA_INTEGER)> grf_match;
      |                     ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/TreeTools/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c tree_distance_functions.cpp -o tree_distance_functions.o
In file included from tree_distance_functions.cpp:6:
In file included from ./tree_distances.h:9:
./ints.h:11:21: warning: extension used [-Wlanguage-extension-token]
   11 | typedef std::vector<typeof(NA_INTEGER)> grf_match;
      |                     ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/TreeTools/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c tree_distances.cpp -o tree_distances.o
In file included from tree_distances.cpp:5:
In file included from ./tree_distances.h:9:
./ints.h:11:21: warning: extension used [-Wlanguage-extension-token]
   11 | typedef std::vector<typeof(NA_INTEGER)> grf_match;
      |                     ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o TreeDist.so RcppExports.o day_1985.o lap.o mast.o nni_distance.o tree_distance_functions.o tree_distances.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/TreeDist/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/TreeDist/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/TreeDist/src'
installing to /data/gannet/ripley/R/packages/tests-clang/TreeDist.Rcheck/00LOCK-TreeDist/00new/TreeDist/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (TreeDist)