* installing *source* package ‘TFMPvalue’ ... ** package ‘TFMPvalue’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘clang version 18.1.4’ using C++ compiler: ‘clang version 18.1.4’ using C++11 make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/TFMPvalue/src' /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c ArgumentException.cpp -o ArgumentException.o /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c FileException.cpp -o FileException.o /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c Matrix.cpp -o Matrix.o /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c ParseException.cpp -o ParseException.o /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c TFMMain.cpp -o TFMMain.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c TFMPvalue_init.c -o TFMPvalue_init.o /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c TFMpvalue.cpp -o TFMpvalue.o TFMpvalue.cpp:119:13: warning: unused variable 'totalSize' [-Wunused-variable] 119 | qlonglong totalSize = 0; | ^~~~~~~~~ TFMpvalue.cpp:120:13: warning: unused variable 'totalOp' [-Wunused-variable] 120 | qlonglong totalOp = 0; | ^~~~~~~ TFMpvalue.cpp:185:13: warning: unused variable 'totalSize' [-Wunused-variable] 185 | qlonglong totalSize = 0; | ^~~~~~~~~ TFMpvalue.cpp:186:13: warning: unused variable 'totalOp' [-Wunused-variable] 186 | qlonglong totalOp = 0; | ^~~~~~~ TFMpvalue.cpp:190:10: warning: unused variable 'pvalue' [-Wunused-variable] 190 | double pvalue = m.fastPvalue(&m,(qlonglong)(score * m.granularity + m.offset)); | ^~~~~~ TFMpvalue.cpp:219:13: warning: variable 'totalSize' set but not used [-Wunused-but-set-variable] 219 | qlonglong totalSize = 0; | ^ TFMpvalue.cpp:220:13: warning: variable 'totalOp' set but not used [-Wunused-but-set-variable] 220 | qlonglong totalOp = 0; | ^ TFMpvalue.cpp:312:13: warning: variable 'totalSize' set but not used [-Wunused-but-set-variable] 312 | qlonglong totalSize; | ^ TFMpvalue.cpp:313:13: warning: variable 'totalOp' set but not used [-Wunused-but-set-variable] 313 | qlonglong totalOp; | ^ 9 warnings generated. TFMMain.cpp:79:13: warning: variable 'totalSize' set but not used [-Wunused-but-set-variable] 79 | qlonglong totalSize = 0; | ^ TFMMain.cpp:80:13: warning: variable 'totalOp' set but not used [-Wunused-but-set-variable] 80 | qlonglong totalOp = 0; | ^ TFMMain.cpp:159:8: warning: unused variable 'sortColumns' [-Wunused-variable] 159 | bool sortColumns = false; | ^~~~~~~~~~~ 3 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++11 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o TFMPvalue.so ArgumentException.o FileException.o Matrix.o ParseException.o TFMMain.o TFMPvalue_init.o TFMpvalue.o make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/TFMPvalue/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/TFMPvalue/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/TFMPvalue/src' installing to /data/gannet/ripley/R/packages/tests-clang/TFMPvalue.Rcheck/00LOCK-TFMPvalue/00new/TFMPvalue/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (TFMPvalue)