* installing *source* package ‘SubTite’ ... ** package ‘SubTite’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘clang version 18.1.4’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/SubTite/src' /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RcppExports.cpp -o RcppExports.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c SUBGROUP.cpp -o SUBGROUP.o SUBGROUP.cpp:186:7: warning: unused variable 'j' [-Wunused-variable] 186 | int j=0; | ^ SUBGROUP.cpp:250:7: warning: unused variable 'j' [-Wunused-variable] 250 | int j=0; | ^ SUBGROUP.cpp:418:7: warning: unused variable 'MEANS' [-Wunused-variable] 418 | int MEANS=0; | ^~~~~ SUBGROUP.cpp:420:7: warning: unused variable 'IntIN' [-Wunused-variable] 420 | int IntIN=0; | ^~~~~ SUBGROUP.cpp:421:7: warning: unused variable 'IntOUT' [-Wunused-variable] 421 | int IntOUT=0; | ^~~~~~ SUBGROUP.cpp:430:7: warning: unused variable 'Group' [-Wunused-variable] 430 | int Group=0; | ^~~~~ SUBGROUP.cpp:433:7: warning: unused variable 'i' [-Wunused-variable] 433 | int i=0; //For the patient index | ^ SUBGROUP.cpp:434:7: warning: unused variable 'rep' [-Wunused-variable] 434 | int rep=0; //For the simulation repetition. | ^~~ SUBGROUP.cpp:455:10: warning: unused variable 'NewMean' [-Wunused-variable] 455 | double NewMean=0; | ^~~~~~~ SUBGROUP.cpp:456:10: warning: unused variable 'NewSlope' [-Wunused-variable] 456 | double NewSlope=0; | ^~~~~~~~ SUBGROUP.cpp:457:7: warning: unused variable 'Which1' [-Wunused-variable] 457 | int Which1=0; | ^~~~~~ SUBGROUP.cpp:458:7: warning: unused variable 'J' [-Wunused-variable] 458 | int J=Dose.n_rows; //Number of Doses | ^ SUBGROUP.cpp:465:10: warning: unused variable 'signew' [-Wunused-variable] 465 | double signew=0; | ^~~~~~ SUBGROUP.cpp:515:10: warning: unused variable 'trialtime' [-Wunused-variable] 515 | double trialtime=0; | ^~~~~~~~~ SUBGROUP.cpp:519:10: warning: variable 'NumSig' set but not used [-Wunused-but-set-variable] 519 | double NumSig=2; | ^ SUBGROUP.cpp:520:10: warning: variable 'IntSig' set but not used [-Wunused-but-set-variable] 520 | double IntSig=1; | ^ SUBGROUP.cpp:521:10: warning: unused variable 'sigvar' [-Wunused-variable] 521 | double sigvar=1; | ^~~~~~ SUBGROUP.cpp:532:10: warning: unused variable 'DEC' [-Wunused-variable] 532 | double DEC=0; | ^~~ SUBGROUP.cpp:1912:7: warning: unused variable 'MEANS' [-Wunused-variable] 1912 | int MEANS=0; | ^~~~~ SUBGROUP.cpp:1914:7: warning: unused variable 'IntIN' [-Wunused-variable] 1914 | int IntIN=0; | ^~~~~ SUBGROUP.cpp:1915:7: warning: unused variable 'IntOUT' [-Wunused-variable] 1915 | int IntOUT=0; | ^~~~~~ SUBGROUP.cpp:1924:7: warning: unused variable 'Group' [-Wunused-variable] 1924 | int Group=0; | ^~~~~ SUBGROUP.cpp:1927:7: warning: unused variable 'i' [-Wunused-variable] 1927 | int i=0; //For the patient index | ^ SUBGROUP.cpp:1928:7: warning: unused variable 'rep' [-Wunused-variable] 1928 | int rep=0; //For the simulation repetition. | ^~~ SUBGROUP.cpp:1949:10: warning: unused variable 'NewMean' [-Wunused-variable] 1949 | double NewMean=0; | ^~~~~~~ SUBGROUP.cpp:1950:10: warning: unused variable 'NewSlope' [-Wunused-variable] 1950 | double NewSlope=0; | ^~~~~~~~ SUBGROUP.cpp:1951:7: warning: unused variable 'Which1' [-Wunused-variable] 1951 | int Which1=0; | ^~~~~~ SUBGROUP.cpp:1952:7: warning: unused variable 'J' [-Wunused-variable] 1952 | int J=Dose.n_rows; //Number of Doses | ^ SUBGROUP.cpp:1959:10: warning: unused variable 'signew' [-Wunused-variable] 1959 | double signew=0; | ^~~~~~ SUBGROUP.cpp:2010:10: warning: unused variable 'trialtime' [-Wunused-variable] 2010 | double trialtime=0; | ^~~~~~~~~ SUBGROUP.cpp:2014:10: warning: variable 'NumSig' set but not used [-Wunused-but-set-variable] 2014 | double NumSig=2; | ^ SUBGROUP.cpp:2015:10: warning: variable 'IntSig' set but not used [-Wunused-but-set-variable] 2015 | double IntSig=1; | ^ SUBGROUP.cpp:2016:10: warning: unused variable 'sigvar' [-Wunused-variable] 2016 | double sigvar=1; | ^~~~~~ SUBGROUP.cpp:2027:10: warning: unused variable 'DEC' [-Wunused-variable] 2027 | double DEC=0; | ^~~ SUBGROUP.cpp:3418:7: warning: unused variable 'MEANS' [-Wunused-variable] 3418 | int MEANS=0; | ^~~~~ SUBGROUP.cpp:3420:7: warning: unused variable 'IntIN' [-Wunused-variable] 3420 | int IntIN=0; | ^~~~~ SUBGROUP.cpp:3421:7: warning: unused variable 'IntOUT' [-Wunused-variable] 3421 | int IntOUT=0; | ^~~~~~ SUBGROUP.cpp:3424:10: warning: unused variable 'varbeta1' [-Wunused-variable] 3424 | double varbeta1=varbeta; | ^~~~~~~~ SUBGROUP.cpp:3426:10: warning: unused variable 'varint1' [-Wunused-variable] 3426 | double varint1=varint; | ^~~~~~~ SUBGROUP.cpp:3465:10: warning: unused variable 'mu' [-Wunused-variable] 3465 | double mu=meanmu; | ^~ SUBGROUP.cpp:3466:10: warning: unused variable 'slope' [-Wunused-variable] 3466 | double slope=meanslope; | ^~~~~ SUBGROUP.cpp:3467:10: warning: unused variable 'sig' [-Wunused-variable] 3467 | double sig=T1; | ^~~ SUBGROUP.cpp:3469:10: warning: unused variable 'NewMean' [-Wunused-variable] 3469 | double NewMean=0; | ^~~~~~~ SUBGROUP.cpp:3470:10: warning: unused variable 'NewSlope' [-Wunused-variable] 3470 | double NewSlope=0; | ^~~~~~~~ SUBGROUP.cpp:3471:7: warning: unused variable 'Which1' [-Wunused-variable] 3471 | int Which1=0; | ^~~~~~ SUBGROUP.cpp:3477:10: warning: unused variable 'alpha' [-Wunused-variable] 3477 | double alpha=0; | ^~~~~ SUBGROUP.cpp:3478:10: warning: unused variable 'U' [-Wunused-variable] 3478 | double U=0; | ^ SUBGROUP.cpp:3479:10: warning: unused variable 'signew' [-Wunused-variable] 3479 | double signew=0; | ^~~~~~ SUBGROUP.cpp:3480:10: warning: unused variable 'slopenew' [-Wunused-variable] 3480 | double slopenew=0; | ^~~~~~~~ SUBGROUP.cpp:3481:10: warning: unused variable 'Munew' [-Wunused-variable] 3481 | double Munew=0; | ^~~~~ SUBGROUP.cpp:3492:7: warning: unused variable 'StoreInx' [-Wunused-variable] 3492 | int StoreInx=0; | ^~~~~~~~ SUBGROUP.cpp:3514:10: warning: unused variable 'NumMu' [-Wunused-variable] 3514 | double NumMu = 2; | ^~~~~ SUBGROUP.cpp:3515:10: warning: unused variable 'NumSlope' [-Wunused-variable] 3515 | double NumSlope=2; | ^~~~~~~~ SUBGROUP.cpp:3516:10: warning: unused variable 'IntMu' [-Wunused-variable] 3516 | double IntMu=1; | ^~~~~ SUBGROUP.cpp:3517:10: warning: unused variable 'IntSlope' [-Wunused-variable] 3517 | double IntSlope=1; | ^~~~~~~~ SUBGROUP.cpp:3530:10: warning: unused variable 'muvar' [-Wunused-variable] 3530 | double muvar=1; | ^~~~~ SUBGROUP.cpp:3531:10: warning: unused variable 'slopevar' [-Wunused-variable] 3531 | double slopevar=1; | ^~~~~~~~ SUBGROUP.cpp:3536:10: warning: unused variable 'NumSig' [-Wunused-variable] 3536 | double NumSig=2; | ^~~~~~ SUBGROUP.cpp:3537:10: warning: unused variable 'IntSig' [-Wunused-variable] 3537 | double IntSig=1; | ^~~~~~ SUBGROUP.cpp:3538:10: warning: unused variable 'sigvar' [-Wunused-variable] 3538 | double sigvar=1; | ^~~~~~ SUBGROUP.cpp:3565:7: warning: unused variable 'eta2' [-Wunused-variable] 3565 | int eta2=0; | ^~~~ 61 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o SubTite.so RcppExports.o SUBGROUP.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortran_main -lFortranRuntime -lFortranDecimal -lm -fopenmp make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/SubTite/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/SubTite/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/SubTite/src' installing to /data/gannet/ripley/R/packages/tests-clang/SubTite.Rcheck/00LOCK-SubTite/00new/SubTite/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SubTite)