* using log directory ‘/data/gannet/ripley/R/packages/tests-clang/SISIR.Rcheck’
* using R Under development (unstable) (2024-05-01 r86507)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    clang version 18.1.4
    flang-new version 18.1.4
* running under: Fedora Linux 36 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘SISIR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘SISIR’ version ‘0.2.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SISIR’ can be installed ... [25s/82s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-clang/SISIR-00install.html' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [6s/20s] OK
* checking whether the package can be loaded with stated dependencies ... [6s/19s] OK
* checking whether the package can be unloaded cleanly ... [6s/12s] OK
* checking whether the namespace can be loaded with stated dependencies ... [6s/20s] OK
* checking whether the namespace can be unloaded cleanly ... [6s/17s] OK
* checking loading without being on the library search path ... [6s/21s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [40s/116s] OK
* checking Rd files ... NOTE
checkRd: (-1) SISIR.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) SISIR.Rd:42-43: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) SISIR.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) SISIR.Rd:45-47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) SISIR.Rd:48-49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) SISIR.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ridgeSIR.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ridgeSIR.Rd:24-25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ridgeSIR.Rd:26-27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ridgeSIR.Rd:28-33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ridgeSIR.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ridgeSIR.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ridgeSIR.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ridgeSIR.Rd:34-40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ridgeSIR.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ridgeSIR.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ridgeSIR.Rd:38-39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sparseSIR.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sparseSIR.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sparseSIR.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sparseSIR.Rd:43-47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sparseSIR.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sparseSIR.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sparseSIR.Rd:48-53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sparseSIR.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sparseSIR.Rd:51-52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sparseSIR.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sparseSIR.Rd:55-60: Lost braces in \itemize; \value handles \item{}{} directly
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [23s/62s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [169s/436s] OK
  Running ‘testthat.R’ [169s/434s]
* checking PDF version of manual ... [8s/27s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 NOTE