* installing *source* package ‘Rsomoclu’ ...
** package ‘Rsomoclu’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 18.1.4’
using C++ compiler: ‘clang version 18.1.4’
using C++11
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/Rsomoclu/src'
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -fopenmp -DHAVE_R -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c Rsomoclu.cpp -o Rsomoclu.o
In file included from Rsomoclu.cpp:7:
./somoclu.h:110:18: warning: private field 'snapshots' is not used [-Wunused-private-field]
  110 |     unsigned int snapshots;
      |                  ^
1 warning generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c Rsomoclu_init.c -o Rsomoclu_init.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -fopenmp -DHAVE_R -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c denseCpuKernels.cpp -o denseCpuKernels.o
In file included from denseCpuKernels.cpp:22:
./somoclu.h:110:18: warning: private field 'snapshots' is not used [-Wunused-private-field]
  110 |     unsigned int snapshots;
      |                  ^
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -fopenmp -DHAVE_R -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c mapDistanceFunctions.cpp -o mapDistanceFunctions.o
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -fopenmp -DHAVE_R -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c sparseCpuKernels.cpp -o sparseCpuKernels.o
In file included from sparseCpuKernels.cpp:21:
./somoclu.h:110:18: warning: private field 'snapshots' is not used [-Wunused-private-field]
  110 |     unsigned int snapshots;
      |                  ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -fopenmp -DHAVE_R -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c training.cpp -o training.o
In file included from mapDistanceFunctions.cpp:22:
./somoclu.h:110:18: warning: private field 'snapshots' is not used [-Wunused-private-field]
  110 |     unsigned int snapshots;
      |                  ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -fopenmp -DHAVE_R -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c uMatrix.cpp -o uMatrix.o
In file included from uMatrix.cpp:1:
./somoclu.h:110:18: warning: private field 'snapshots' is not used [-Wunused-private-field]
  110 |     unsigned int snapshots;
      |                  ^
1 warning generated.
training.cpp:201:16: warning: unused variable 'epoch_time' [-Wunused-variable]
  201 |         double epoch_time = get_wall_time();
      |                ^~~~~~~~~~
training.cpp:146:9: warning: unused variable 'nProcs' [-Wunused-variable]
  146 |     int nProcs = 1;
      |         ^~~~~~
In file included from training.cpp:28:
./somoclu.h:110:18: warning: private field 'snapshots' is not used [-Wunused-private-field]
  110 |     unsigned int snapshots;
      |                  ^
3 warnings generated.
/usr/local/clang18/bin/clang++ -std=gnu++11 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o Rsomoclu.so Rsomoclu.o Rsomoclu_init.o denseCpuKernels.o mapDistanceFunctions.o sparseCpuKernels.o training.o uMatrix.o -fopenmp
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/Rsomoclu/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/Rsomoclu/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/Rsomoclu/src'
installing to /data/gannet/ripley/R/packages/tests-clang/Rsomoclu.Rcheck/00LOCK-Rsomoclu/00new/Rsomoclu/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rsomoclu)