* installing *source* package ‘Riemann’ ... ** package ‘Riemann’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘clang version 18.1.4’ using C++11 make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/Riemann/src' /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RcppExports.cpp -o RcppExports.o /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c auxiliary.cpp -o auxiliary.o /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c distribution_grassmann.cpp -o distribution_grassmann.o /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c distribution_sphere.cpp -o distribution_sphere.o /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c distribution_spnorm.cpp -o distribution_spnorm.o /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c functions_01_basic.cpp -o functions_01_basic.o /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c functions_02_inference.cpp -o functions_02_inference.o /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c functions_03_clustering.cpp -o functions_03_clustering.o /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c functions_03_clustering_criteria.cpp -o functions_03_clustering_criteria.o /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c functions_05_visualization.cpp -o functions_05_visualization.o /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c functions_06_curve.cpp -o functions_06_curve.o /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c functions_07_learning.cpp -o functions_07_learning.o /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c functions_special_others.cpp -o functions_special_others.o /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c functions_special_spd.cpp -o functions_special_spd.o functions_03_clustering.cpp:94:7: warning: unused variable 'nrow' [-Wunused-variable] 94 | int nrow = data.n_rows; | ^~~~ functions_03_clustering.cpp:95:7: warning: unused variable 'ncol' [-Wunused-variable] 95 | int ncol = data.n_cols; | ^~~~ functions_03_clustering.cpp:102:8: warning: unused variable 'status' [-Wunused-variable] 102 | bool status = arma::kmeans(means, arma::trans(logvecs), K, random_subset, 50, false); | ^~~~~~ functions_03_clustering.cpp:596:7: warning: unused variable 'M' [-Wunused-variable] 596 | int M = data.n_slices; | ^ functions_03_clustering.cpp:597:7: warning: unused variable 'nrow' [-Wunused-variable] 597 | int nrow = data.n_rows; | ^~~~ functions_03_clustering.cpp:598:7: warning: unused variable 'ncol' [-Wunused-variable] 598 | int ncol = data.n_cols; | ^~~~ functions_03_clustering_criteria.cpp:27:7: warning: unused variable 'N' [-Wunused-variable] 27 | int N = label.n_elem; | ^ functions_03_clustering_criteria.cpp:39:7: warning: unused variable 'N' [-Wunused-variable] 39 | int N = X.n_slices; | ^ functions_03_clustering_criteria.cpp:57:7: warning: unused variable 'nrow' [-Wunused-variable] 57 | int nrow = X.n_rows; | ^~~~ functions_03_clustering_criteria.cpp:58:7: warning: unused variable 'ncol' [-Wunused-variable] 58 | int ncol = X.n_cols; | ^~~~ functions_03_clustering_criteria.cpp:246:7: warning: unused variable 'Nw' [-Wunused-variable] 246 | int Nw = cvi_helper_nw(label); | ^~ functions_07_learning.cpp:124:7: warning: unused variable 'n' [-Wunused-variable] 124 | int n = X.n_rows; | ^ 5 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c riemann_general.cpp -o riemann_general.o 6 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c riemann_src.cpp -o riemann_src.o 1 warning generated. In file included from riemann_src.cpp:3: ./riemann_manifolds.h:234:7: warning: unused variable 'p' [-Wunused-variable] 234 | int p = X.n_rows; | ^ ./riemann_manifolds.h:259:13: warning: unused variable 'n' [-Wunused-variable] 259 | const int n = x.n_rows; | ^ ./riemann_manifolds.h:278:13: warning: unused variable 'n' [-Wunused-variable] 278 | const int n = U0.n_rows; | ^ ./riemann_manifolds.h:390:13: warning: unused variable 'n' [-Wunused-variable] 390 | const int n = x.n_rows; | ^ ./riemann_manifolds.h:391:13: warning: unused variable 'p' [-Wunused-variable] 391 | const int p = x.n_cols; | ^ ./riemann_manifolds.h:407:7: warning: unused variable 'n' [-Wunused-variable] 407 | int n = x.n_rows; | ^ riemann_src.cpp:343:7: warning: unused variable 'nrow' [-Wunused-variable] 343 | int nrow = data.n_rows; | ^~~~ riemann_src.cpp:344:7: warning: unused variable 'ncol' [-Wunused-variable] 344 | int ncol = data.n_cols; | ^~~~ 8 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++11 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o Riemann.so RcppExports.o auxiliary.o distribution_grassmann.o distribution_sphere.o distribution_spnorm.o functions_01_basic.o functions_02_inference.o functions_03_clustering.o functions_03_clustering_criteria.o functions_05_visualization.o functions_06_curve.o functions_07_learning.o functions_special_others.o functions_special_spd.o riemann_general.o riemann_src.o -fopenmp -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortran_main -lFortranRuntime -lFortranDecimal -lm make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/Riemann/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/Riemann/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/Riemann/src' installing to /data/gannet/ripley/R/packages/tests-clang/Riemann.Rcheck/00LOCK-Riemann/00new/Riemann/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Riemann)