* installing *source* package ‘Rcsdp’ ... ** package ‘Rcsdp’ successfully unpacked and MD5 sums checked ** using staged installation Using bundled CSDP checking for gcc... /usr/local/clang18/bin/clang checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether /usr/local/clang18/bin/clang accepts -g... yes checking for /usr/local/clang18/bin/clang option to enable C11 features... none needed checking how to run the C preprocessor... /usr/local/clang18/bin/clang -E configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘clang version 18.1.4’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/Rcsdp/src' /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -ICsdp/include -isystem /usr/local/clang18/include -I/usr/local/clang/include -DNOSHORTS -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c Rcsdp.c -o Rcsdp.o Rcsdp.c:37:10: warning: variable 'nblocks' set but not used [-Wunused-but-set-variable] 37 | int n, nblocks, nconstraints, *blocktypes, *blocksizes; | ^ Rcsdp.c:37:34: warning: variable 'blocktypes' set but not used [-Wunused-but-set-variable] 37 | int n, nblocks, nconstraints, *blocktypes, *blocksizes; | ^ Rcsdp.c:37:47: warning: variable 'blocksizes' set but not used [-Wunused-but-set-variable] 37 | int n, nblocks, nconstraints, *blocktypes, *blocksizes; | ^ Rcsdp.c:230:10: warning: variable 'nblocks' set but not used [-Wunused-but-set-variable] 230 | int n, nblocks, nconstraints, status; | ^ 4 warnings generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -ICsdp/include -isystem /usr/local/clang18/include -I/usr/local/clang/include -DNOSHORTS -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c convert.c -o convert.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -ICsdp/include -isystem /usr/local/clang18/include -I/usr/local/clang/include -DNOSHORTS -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c testing.c -o testing.o (cd Csdp/lib && \ (make libsdp.a CC="/usr/local/clang18/bin/clang" CFLAGS="-O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include" AR="ar" RANLIB="ranlib") && \ touch Csdp.ts) make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/Rcsdp/src/Csdp/lib' /usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o readprob.o readprob.c /usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o sdp.o sdp.c sdp.c:112:10: warning: variable 'oldmu' set but not used [-Wunused-but-set-variable] 112 | double oldmu; | ^ sdp.c:129:10: warning: variable 'oldmaxrelinfeas' set but not used [-Wunused-but-set-variable] 129 | double oldmaxrelinfeas=1.0e100; | ^ sdp.c:130:10: warning: variable 'newpobj' set but not used [-Wunused-but-set-variable] 130 | double newpobj; | ^ sdp.c:131:10: warning: variable 'newdobj' set but not used [-Wunused-but-set-variable] 131 | double newdobj; | ^ sdp.c:142:7: warning: variable 'lastimprove' set but not used [-Wunused-but-set-variable] 142 | int lastimprove=0; | ^ 5 warnings generated. /usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o op_o.o op_o.c /usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o psd_feas.o psd_feas.c /usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o op_a.o op_a.c /usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o op_at.o op_at.c /usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o Fnorm.o Fnorm.c /usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o calc_pobj.o calc_pobj.c /usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o calc_dobj.o calc_dobj.c /usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o trace_prod.o trace_prod.c /usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o zero_mat.o zero_mat.c /usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o mat_mult.o mat_mult.c /usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o sym_mat.o sym_mat.c /usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o copy_mat.o copy_mat.c /usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o addscaledmat.o addscaledmat.c /usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o user_exit.o user_exit.c /usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o make_i.o make_i.c /usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o allocmat.o allocmat.c /usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o initsoln.o initsoln.c /usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o initparams.o initparams.c initparams.c:33:11: warning: variable 'ret' set but not used [-Wunused-but-set-variable] 33 | int ret = fscanf(paramfile,"%*[^=]%*c%lf",&(params->axtol)); | ^ 1 warning generated. /usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o add_mat.o add_mat.c /usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o writesol.o writesol.c /usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o readsol.o readsol.c /usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o easysdp.o easysdp.c easysdp.c:61:7: warning: variable 'blk' set but not used [-Wunused-but-set-variable] 61 | int blk; | ^ 1 warning generated. /usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o writeprob.o writeprob.c /usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o solvesys.o solvesys.c /usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o makefill.o makefill.c /usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o mat_multsp.o mat_multsp.c mat_multsp.c:56:7: warning: unused variable 'total_threads' [-Wunused-variable] 56 | int total_threads; | ^~~~~~~~~~~~~ mat_multsp.c:57:7: warning: unused variable 'thread_num' [-Wunused-variable] 57 | int thread_num; | ^~~~~~~~~~ mat_multsp.c:294:7: warning: unused variable 'total_threads' [-Wunused-variable] 294 | int total_threads; | ^~~~~~~~~~~~~ mat_multsp.c:295:7: warning: unused variable 'thread_num' [-Wunused-variable] 295 | int thread_num; | ^~~~~~~~~~ 4 warnings generated. /usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o norms.o norms.c /usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o linesearch.o linesearch.c /usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o matvec.o matvec.c /usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o chol.o chol.c chol.c:150:10: warning: variable 'scale' set but not used [-Wunused-but-set-variable] 150 | double scale; | ^ 1 warning generated. /usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o qreig.o qreig.c /usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o tweakgap.o tweakgap.c /usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o freeprob.o freeprob.c /usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o packed.o packed.c /usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o sortentries.o sortentries.c ar cr libsdp.a readprob.o sdp.o op_o.o psd_feas.o op_a.o op_at.o Fnorm.o calc_pobj.o calc_dobj.o trace_prod.o zero_mat.o mat_mult.o sym_mat.o copy_mat.o addscaledmat.o user_exit.o make_i.o allocmat.o initsoln.o initparams.o add_mat.o writesol.o readsol.o easysdp.o writeprob.o solvesys.o makefill.o mat_multsp.o norms.o linesearch.o matvec.o chol.o qreig.o tweakgap.o freeprob.o packed.o sortentries.o make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/Rcsdp/src/Csdp/lib' /usr/local/clang18/bin/clang -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o Rcsdp.so Rcsdp.o convert.o testing.o -LCsdp/lib -lsdp -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortran_main -lFortranRuntime -lFortranDecimal -lm -lm make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/Rcsdp/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/Rcsdp/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/Rcsdp/src' installing to /data/gannet/ripley/R/packages/tests-clang/Rcsdp.Rcheck/00LOCK-Rcsdp/00new/Rcsdp/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rcsdp)