* installing *source* package ‘Rcatch22’ ...
** package ‘Rcatch22’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 18.1.4’
using C++ compiler: ‘clang version 18.1.4’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/Rcatch22/src'
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c CO_AutoCorr.c -o CO_AutoCorr.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c DN_HistogramMode_10.c -o DN_HistogramMode_10.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c DN_HistogramMode_5.c -o DN_HistogramMode_5.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c DN_Mean.c -o DN_Mean.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c DN_OutlierInclude.c -o DN_OutlierInclude.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c DN_Spread_Std.c -o DN_Spread_Std.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c FC_LocalSimple.c -o FC_LocalSimple.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c IN_AutoMutualInfoStats.c -o IN_AutoMutualInfoStats.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c MD_hrv.c -o MD_hrv.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c PD_PeriodicityWang.c -o PD_PeriodicityWang.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RcppExports.cpp -o RcppExports.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c SB_BinaryStats.c -o SB_BinaryStats.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c SB_CoarseGrain.c -o SB_CoarseGrain.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c SB_MotifThree.c -o SB_MotifThree.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c SB_TransitionMatrix.c -o SB_TransitionMatrix.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c SC_FluctAnal.c -o SC_FluctAnal.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c SP_Summaries.c -o SP_Summaries.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c butterworth.c -o butterworth.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c catch22.cpp -o catch22.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c fft.c -o fft.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c helper_functions.c -o helper_functions.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c histcounts.c -o histcounts.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c splinefit.c -o splinefit.o
In file included from catch22.cpp:5:
In file included from ./CO_AutoCorr.h:9:
./fft.h:23:29: warning: '_Complex' is a C99 extension [-Wc99-extensions]
23 | extern void twiddles(double _Complex a[], int size);
| ^
./fft.h:24:24: warning: '_Complex' is a C99 extension [-Wc99-extensions]
24 | extern void fft(double _Complex a[], int size, double _Complex tw[]);
| ^
./fft.h:24:55: warning: '_Complex' is a C99 extension [-Wc99-extensions]
24 | extern void fft(double _Complex a[], int size, double _Complex tw[]);
| ^
./fft.h:25:25: warning: '_Complex' is a C99 extension [-Wc99-extensions]
25 | extern void ifft(double _Complex a[], int size, double _Complex tw[]);
| ^
./fft.h:25:56: warning: '_Complex' is a C99 extension [-Wc99-extensions]
25 | extern void ifft(double _Complex a[], int size, double _Complex tw[]);
| ^
In file included from catch22.cpp:5:
./CO_AutoCorr.h:19:33: warning: '_Complex' is a C99 extension [-Wc99-extensions]
19 | extern void dot_multiply(double _Complex a[], double _Complex b[], int size);
| ^
./CO_AutoCorr.h:19:54: warning: '_Complex' is a C99 extension [-Wc99-extensions]
19 | extern void dot_multiply(double _Complex a[], double _Complex b[], int size);
| ^
In file included from catch22.cpp:16:
In file included from ./SB_CoarseGrain.h:8:
./helper_functions.h:22:15: warning: '_Complex' is a C99 extension [-Wc99-extensions]
22 | extern double _Complex _Cminuscc(const double _Complex x, const double _Complex y);
| ^
./helper_functions.h:22:47: warning: '_Complex' is a C99 extension [-Wc99-extensions]
22 | extern double _Complex _Cminuscc(const double _Complex x, const double _Complex y);
| ^
./helper_functions.h:22:72: warning: '_Complex' is a C99 extension [-Wc99-extensions]
22 | extern double _Complex _Cminuscc(const double _Complex x, const double _Complex y);
| ^
./helper_functions.h:23:15: warning: '_Complex' is a C99 extension [-Wc99-extensions]
23 | extern double _Complex _Caddcc(const double _Complex x, const double _Complex y);
| ^
./helper_functions.h:23:45: warning: '_Complex' is a C99 extension [-Wc99-extensions]
23 | extern double _Complex _Caddcc(const double _Complex x, const double _Complex y);
| ^
./helper_functions.h:23:70: warning: '_Complex' is a C99 extension [-Wc99-extensions]
23 | extern double _Complex _Caddcc(const double _Complex x, const double _Complex y);
| ^
./helper_functions.h:24:15: warning: '_Complex' is a C99 extension [-Wc99-extensions]
24 | extern double _Complex _Cdivcc(const double _Complex x, const double _Complex y);
| ^
./helper_functions.h:24:45: warning: '_Complex' is a C99 extension [-Wc99-extensions]
24 | extern double _Complex _Cdivcc(const double _Complex x, const double _Complex y);
| ^
./helper_functions.h:24:70: warning: '_Complex' is a C99 extension [-Wc99-extensions]
24 | extern double _Complex _Cdivcc(const double _Complex x, const double _Complex y);
| ^
./helper_functions.h:25:15: warning: '_Complex' is a C99 extension [-Wc99-extensions]
25 | extern double _Complex _Cmulcc(const double _Complex x, const double _Complex y);
| ^
./helper_functions.h:25:45: warning: '_Complex' is a C99 extension [-Wc99-extensions]
25 | extern double _Complex _Cmulcc(const double _Complex x, const double _Complex y);
| ^
./helper_functions.h:25:70: warning: '_Complex' is a C99 extension [-Wc99-extensions]
25 | extern double _Complex _Cmulcc(const double _Complex x, const double _Complex y);
| ^
19 warnings generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c stats.c -o stats.o
stats.c:210:14: warning: variable 'sumy2' set but not used [-Wunused-but-set-variable]
210 | double sumy2 = 0.0; /* sum of y**2 */
| ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o Rcatch22.so CO_AutoCorr.o DN_HistogramMode_10.o DN_HistogramMode_5.o DN_Mean.o DN_OutlierInclude.o DN_Spread_Std.o FC_LocalSimple.o IN_AutoMutualInfoStats.o MD_hrv.o PD_PeriodicityWang.o RcppExports.o SB_BinaryStats.o SB_CoarseGrain.o SB_MotifThree.o SB_TransitionMatrix.o SC_FluctAnal.o SP_Summaries.o butterworth.o catch22.o fft.o helper_functions.o histcounts.o splinefit.o stats.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/Rcatch22/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/Rcatch22/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/Rcatch22/src'
installing to /data/gannet/ripley/R/packages/tests-clang/Rcatch22.Rcheck/00LOCK-Rcatch22/00new/Rcatch22/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rcatch22)