* installing *source* package ‘RMixtCompIO’ ... ** package ‘RMixtCompIO’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘clang version 18.1.4’ using C++17 make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/RMixtCompIO/src' /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RGraph.cpp -o RGraph.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RcppExports.cpp -o RcppExports.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c UTest.cpp -o UTest.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c rmc.cpp -o rmc.o In file included from RcppExports.cpp:4: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from RcppExports.cpp:4: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from RcppExports.cpp:4: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from RcppExports.cpp:4: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Data/AugmentedData.cpp -o lib/Data/AugmentedData.o In file included from rmc.cpp:26: In file included from lib/Run/Learn.h:26: lib/Composer/MixtureComposer.h:291:9: warning: unused variable 'nObs' [-Wunused-variable] 291 | Index nObs = paramStat_.getStatStorage().cols(); | ^~~~ /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Composer/MixtureComposer.cpp -o lib/Composer/MixtureComposer.o 5 warnings generated. In file included from UTest.cpp:25: In file included from lib/MixtComp.h:42: In file included from lib/Manager/createAllMixtures.h:27: lib/Composer/MixtureComposer.h:291:9: warning: unused variable 'nObs' [-Wunused-variable] 291 | Index nObs = paramStat_.getStatStorage().cols(); | ^~~~ /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Composer/ClassDataStat.cpp -o lib/Composer/ClassDataStat.o In file included from lib/Composer/MixtureComposer.cpp:33: lib/Composer/MixtureComposer.h:291:9: warning: unused variable 'nObs' [-Wunused-variable] 291 | Index nObs = paramStat_.getStatStorage().cols(); | ^~~~ 1 warning generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Composer/ClassSampler.cpp -o lib/Composer/ClassSampler.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Composer/ZClassInd.cpp -o lib/Composer/ZClassInd.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Statistic/GaussianStatistic.cpp -o lib/Statistic/GaussianStatistic.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Statistic/RNG.cpp -o lib/Statistic/RNG.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Statistic/UniformStatistic.cpp -o lib/Statistic/UniformStatistic.o 1 warning generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Statistic/UniformIntStatistic.cpp -o lib/Statistic/UniformIntStatistic.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Statistic/MultinomialStatistic.cpp -o lib/Statistic/MultinomialStatistic.o 1 warning generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Statistic/ExponentialStatistic.cpp -o lib/Statistic/ExponentialStatistic.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Functional/FunctionCS.cpp -o lib/Mixture/Functional/FunctionCS.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Functional/FuncCSComputation.cpp -o lib/Mixture/Functional/FuncCSComputation.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Functional/FuncCSClass.cpp -o lib/Mixture/Functional/FuncCSClass.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Functional/FunctionCSParser.cpp -o lib/Mixture/Functional/FunctionCSParser.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Simple/NegativeBinomial/NegativeBinomialStatistic.cpp -o lib/Mixture/Simple/NegativeBinomial/NegativeBinomialStatistic.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Simple/NegativeBinomial/NegativeBinomial.cpp -o lib/Mixture/Simple/NegativeBinomial/NegativeBinomial.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Simple/NegativeBinomial/NegativeBinomialLikelihood.cpp -o lib/Mixture/Simple/NegativeBinomial/NegativeBinomialLikelihood.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Simple/NegativeBinomial/NegativeBinomialSampler.cpp -o lib/Mixture/Simple/NegativeBinomial/NegativeBinomialSampler.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Simple/Multinomial/MultinomialDataStat.cpp -o lib/Mixture/Simple/Multinomial/MultinomialDataStat.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Simple/Multinomial/MultinomialSampler.cpp -o lib/Mixture/Simple/Multinomial/MultinomialSampler.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Simple/Multinomial/Multinomial.cpp -o lib/Mixture/Simple/Multinomial/Multinomial.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Simple/Weibull/WeibullLikelihood.cpp -o lib/Mixture/Simple/Weibull/WeibullLikelihood.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Simple/Weibull/Weibull.cpp -o lib/Mixture/Simple/Weibull/Weibull.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Simple/Weibull/WeibullSampler.cpp -o lib/Mixture/Simple/Weibull/WeibullSampler.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Simple/Weibull/WeibullStatistic.cpp -o lib/Mixture/Simple/Weibull/WeibullStatistic.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Simple/Poisson/PoissonStatistic.cpp -o lib/Mixture/Simple/Poisson/PoissonStatistic.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Simple/Poisson/PoissonSampler.cpp -o lib/Mixture/Simple/Poisson/PoissonSampler.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Simple/Poisson/Poisson.cpp -o lib/Mixture/Simple/Poisson/Poisson.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Simple/Poisson/PoissonLikelihood.cpp -o lib/Mixture/Simple/Poisson/PoissonLikelihood.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Simple/Gaussian/GaussianLikelihood.cpp -o lib/Mixture/Simple/Gaussian/GaussianLikelihood.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Simple/Gaussian/GaussianSampler.cpp -o lib/Mixture/Simple/Gaussian/GaussianSampler.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Simple/Gaussian/Gaussian.cpp -o lib/Mixture/Simple/Gaussian/Gaussian.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Rank/RankISRParser.cpp -o lib/Mixture/Rank/RankISRParser.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Rank/RankVal.cpp -o lib/Mixture/Rank/RankVal.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Rank/RankISRStat.cpp -o lib/Mixture/Rank/RankISRStat.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Rank/RankISRIndividual.cpp -o lib/Mixture/Rank/RankISRIndividual.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Rank/RankISRClass.cpp -o lib/Mixture/Rank/RankISRClass.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Various/Various.cpp -o lib/Various/Various.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Various/Timer.cpp -o lib/Various/Timer.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Various/Constants.cpp -o lib/Various/Constants.o lib/Various/Timer.cpp:56:8: warning: unused variable 'timePerIt' [-Wunused-variable] 56 | Real timePerIt = dt.total_milliseconds() / 1000. / Real(iteration); | ^~~~~~~~~ lib/Various/Timer.cpp:71:7: warning: unused variable 'sinceCreation' [-Wunused-variable] 71 | Real sinceCreation = dtCreation.total_milliseconds() / 1000.; | ^~~~~~~~~~~~~ 2 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/IO/SpecialStr.cpp -o lib/IO/SpecialStr.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/IO/IOFunctions.cpp -o lib/IO/IOFunctions.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/LinAlg/Typedef.cpp -o lib/LinAlg/Typedef.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/LinAlg/names.cpp -o lib/LinAlg/names.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/LinAlg/Maths.cpp -o lib/LinAlg/Maths.o /usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o RMixtCompIO.so RGraph.o RcppExports.o UTest.o rmc.o lib/Data/AugmentedData.o lib/Composer/MixtureComposer.o lib/Composer/ClassDataStat.o lib/Composer/ClassSampler.o lib/Composer/ZClassInd.o lib/Statistic/GaussianStatistic.o lib/Statistic/RNG.o lib/Statistic/UniformStatistic.o lib/Statistic/UniformIntStatistic.o lib/Statistic/MultinomialStatistic.o lib/Statistic/ExponentialStatistic.o lib/Mixture/Functional/FunctionCS.o lib/Mixture/Functional/FuncCSComputation.o lib/Mixture/Functional/FuncCSClass.o lib/Mixture/Functional/FunctionCSParser.o lib/Mixture/Simple/NegativeBinomial/NegativeBinomialStatistic.o lib/Mixture/Simple/NegativeBinomial/NegativeBinomial.o lib/Mixture/Simple/NegativeBinomial/NegativeBinomialLikelihood.o lib/Mixture/Simple/NegativeBinomial/NegativeBinomialSampler.o lib/Mixture/Simple/Multinomial/MultinomialDataStat.o lib/Mixture/Simple/Multinomial/MultinomialSampler.o lib/Mixture/Simple/Multinomial/Multinomial.o lib/Mixture/Simple/Weibull/WeibullLikelihood.o lib/Mixture/Simple/Weibull/Weibull.o lib/Mixture/Simple/Weibull/WeibullSampler.o lib/Mixture/Simple/Weibull/WeibullStatistic.o lib/Mixture/Simple/Poisson/PoissonStatistic.o lib/Mixture/Simple/Poisson/PoissonSampler.o lib/Mixture/Simple/Poisson/Poisson.o lib/Mixture/Simple/Poisson/PoissonLikelihood.o lib/Mixture/Simple/Gaussian/GaussianLikelihood.o lib/Mixture/Simple/Gaussian/GaussianSampler.o lib/Mixture/Simple/Gaussian/Gaussian.o lib/Mixture/Rank/RankISRParser.o lib/Mixture/Rank/RankVal.o lib/Mixture/Rank/RankISRStat.o lib/Mixture/Rank/RankISRIndividual.o lib/Mixture/Rank/RankISRClass.o lib/Various/Various.o lib/Various/Timer.o lib/Various/Constants.o lib/IO/SpecialStr.o lib/IO/IOFunctions.o lib/LinAlg/Typedef.o lib/LinAlg/names.o lib/LinAlg/Maths.o make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/RMixtCompIO/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/RMixtCompIO/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/RMixtCompIO/src' installing to /data/gannet/ripley/R/packages/tests-clang/RMixtCompIO.Rcheck/00LOCK-RMixtCompIO/00new/RMixtCompIO/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RMixtCompIO)