* installing *source* package ‘RMixtCompIO’ ...
** package ‘RMixtCompIO’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 18.1.4’
using C++17
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/RMixtCompIO/src'
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RGraph.cpp -o RGraph.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RcppExports.cpp -o RcppExports.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c UTest.cpp -o UTest.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c rmc.cpp -o rmc.o
In file included from RcppExports.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from RcppExports.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from RcppExports.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from RcppExports.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Data/AugmentedData.cpp -o lib/Data/AugmentedData.o
In file included from rmc.cpp:26:
In file included from lib/Run/Learn.h:26:
lib/Composer/MixtureComposer.h:291:9: warning: unused variable 'nObs' [-Wunused-variable]
291 | Index nObs = paramStat_.getStatStorage().cols();
| ^~~~
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Composer/MixtureComposer.cpp -o lib/Composer/MixtureComposer.o
5 warnings generated.
In file included from UTest.cpp:25:
In file included from lib/MixtComp.h:42:
In file included from lib/Manager/createAllMixtures.h:27:
lib/Composer/MixtureComposer.h:291:9: warning: unused variable 'nObs' [-Wunused-variable]
291 | Index nObs = paramStat_.getStatStorage().cols();
| ^~~~
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Composer/ClassDataStat.cpp -o lib/Composer/ClassDataStat.o
In file included from lib/Composer/MixtureComposer.cpp:33:
lib/Composer/MixtureComposer.h:291:9: warning: unused variable 'nObs' [-Wunused-variable]
291 | Index nObs = paramStat_.getStatStorage().cols();
| ^~~~
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Composer/ClassSampler.cpp -o lib/Composer/ClassSampler.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Composer/ZClassInd.cpp -o lib/Composer/ZClassInd.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Statistic/GaussianStatistic.cpp -o lib/Statistic/GaussianStatistic.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Statistic/RNG.cpp -o lib/Statistic/RNG.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Statistic/UniformStatistic.cpp -o lib/Statistic/UniformStatistic.o
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Statistic/UniformIntStatistic.cpp -o lib/Statistic/UniformIntStatistic.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Statistic/MultinomialStatistic.cpp -o lib/Statistic/MultinomialStatistic.o
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Statistic/ExponentialStatistic.cpp -o lib/Statistic/ExponentialStatistic.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Functional/FunctionCS.cpp -o lib/Mixture/Functional/FunctionCS.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Functional/FuncCSComputation.cpp -o lib/Mixture/Functional/FuncCSComputation.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Functional/FuncCSClass.cpp -o lib/Mixture/Functional/FuncCSClass.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Functional/FunctionCSParser.cpp -o lib/Mixture/Functional/FunctionCSParser.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Simple/NegativeBinomial/NegativeBinomialStatistic.cpp -o lib/Mixture/Simple/NegativeBinomial/NegativeBinomialStatistic.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Simple/NegativeBinomial/NegativeBinomial.cpp -o lib/Mixture/Simple/NegativeBinomial/NegativeBinomial.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Simple/NegativeBinomial/NegativeBinomialLikelihood.cpp -o lib/Mixture/Simple/NegativeBinomial/NegativeBinomialLikelihood.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Simple/NegativeBinomial/NegativeBinomialSampler.cpp -o lib/Mixture/Simple/NegativeBinomial/NegativeBinomialSampler.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Simple/Multinomial/MultinomialDataStat.cpp -o lib/Mixture/Simple/Multinomial/MultinomialDataStat.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Simple/Multinomial/MultinomialSampler.cpp -o lib/Mixture/Simple/Multinomial/MultinomialSampler.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Simple/Multinomial/Multinomial.cpp -o lib/Mixture/Simple/Multinomial/Multinomial.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Simple/Weibull/WeibullLikelihood.cpp -o lib/Mixture/Simple/Weibull/WeibullLikelihood.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Simple/Weibull/Weibull.cpp -o lib/Mixture/Simple/Weibull/Weibull.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Simple/Weibull/WeibullSampler.cpp -o lib/Mixture/Simple/Weibull/WeibullSampler.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Simple/Weibull/WeibullStatistic.cpp -o lib/Mixture/Simple/Weibull/WeibullStatistic.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Simple/Poisson/PoissonStatistic.cpp -o lib/Mixture/Simple/Poisson/PoissonStatistic.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Simple/Poisson/PoissonSampler.cpp -o lib/Mixture/Simple/Poisson/PoissonSampler.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Simple/Poisson/Poisson.cpp -o lib/Mixture/Simple/Poisson/Poisson.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Simple/Poisson/PoissonLikelihood.cpp -o lib/Mixture/Simple/Poisson/PoissonLikelihood.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Simple/Gaussian/GaussianLikelihood.cpp -o lib/Mixture/Simple/Gaussian/GaussianLikelihood.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Simple/Gaussian/GaussianSampler.cpp -o lib/Mixture/Simple/Gaussian/GaussianSampler.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Simple/Gaussian/Gaussian.cpp -o lib/Mixture/Simple/Gaussian/Gaussian.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Rank/RankISRParser.cpp -o lib/Mixture/Rank/RankISRParser.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Rank/RankVal.cpp -o lib/Mixture/Rank/RankVal.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Rank/RankISRStat.cpp -o lib/Mixture/Rank/RankISRStat.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Rank/RankISRIndividual.cpp -o lib/Mixture/Rank/RankISRIndividual.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Mixture/Rank/RankISRClass.cpp -o lib/Mixture/Rank/RankISRClass.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Various/Various.cpp -o lib/Various/Various.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Various/Timer.cpp -o lib/Various/Timer.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/Various/Constants.cpp -o lib/Various/Constants.o
lib/Various/Timer.cpp:56:8: warning: unused variable 'timePerIt' [-Wunused-variable]
56 | Real timePerIt = dt.total_milliseconds() / 1000. / Real(iteration);
| ^~~~~~~~~
lib/Various/Timer.cpp:71:7: warning: unused variable 'sinceCreation' [-Wunused-variable]
71 | Real sinceCreation = dtCreation.total_milliseconds() / 1000.;
| ^~~~~~~~~~~~~
2 warnings generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/IO/SpecialStr.cpp -o lib/IO/SpecialStr.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/IO/IOFunctions.cpp -o lib/IO/IOFunctions.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/LinAlg/Typedef.cpp -o lib/LinAlg/Typedef.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/LinAlg/names.cpp -o lib/LinAlg/names.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -Ilib -Ilib/LinAlg -DEIGEN_MATRIXBASE_PLUGIN=\"EigenMatrixBaseAddons.h\" -Ioptim/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lib/LinAlg/Maths.cpp -o lib/LinAlg/Maths.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o RMixtCompIO.so RGraph.o RcppExports.o UTest.o rmc.o lib/Data/AugmentedData.o lib/Composer/MixtureComposer.o lib/Composer/ClassDataStat.o lib/Composer/ClassSampler.o lib/Composer/ZClassInd.o lib/Statistic/GaussianStatistic.o lib/Statistic/RNG.o lib/Statistic/UniformStatistic.o lib/Statistic/UniformIntStatistic.o lib/Statistic/MultinomialStatistic.o lib/Statistic/ExponentialStatistic.o lib/Mixture/Functional/FunctionCS.o lib/Mixture/Functional/FuncCSComputation.o lib/Mixture/Functional/FuncCSClass.o lib/Mixture/Functional/FunctionCSParser.o lib/Mixture/Simple/NegativeBinomial/NegativeBinomialStatistic.o lib/Mixture/Simple/NegativeBinomial/NegativeBinomial.o lib/Mixture/Simple/NegativeBinomial/NegativeBinomialLikelihood.o lib/Mixture/Simple/NegativeBinomial/NegativeBinomialSampler.o lib/Mixture/Simple/Multinomial/MultinomialDataStat.o lib/Mixture/Simple/Multinomial/MultinomialSampler.o lib/Mixture/Simple/Multinomial/Multinomial.o lib/Mixture/Simple/Weibull/WeibullLikelihood.o lib/Mixture/Simple/Weibull/Weibull.o lib/Mixture/Simple/Weibull/WeibullSampler.o lib/Mixture/Simple/Weibull/WeibullStatistic.o lib/Mixture/Simple/Poisson/PoissonStatistic.o lib/Mixture/Simple/Poisson/PoissonSampler.o lib/Mixture/Simple/Poisson/Poisson.o lib/Mixture/Simple/Poisson/PoissonLikelihood.o lib/Mixture/Simple/Gaussian/GaussianLikelihood.o lib/Mixture/Simple/Gaussian/GaussianSampler.o lib/Mixture/Simple/Gaussian/Gaussian.o lib/Mixture/Rank/RankISRParser.o lib/Mixture/Rank/RankVal.o lib/Mixture/Rank/RankISRStat.o lib/Mixture/Rank/RankISRIndividual.o lib/Mixture/Rank/RankISRClass.o lib/Various/Various.o lib/Various/Timer.o lib/Various/Constants.o lib/IO/SpecialStr.o lib/IO/IOFunctions.o lib/LinAlg/Typedef.o lib/LinAlg/names.o lib/LinAlg/Maths.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/RMixtCompIO/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/RMixtCompIO/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/RMixtCompIO/src'
installing to /data/gannet/ripley/R/packages/tests-clang/RMixtCompIO.Rcheck/00LOCK-RMixtCompIO/00new/RMixtCompIO/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RMixtCompIO)