* using log directory ‘/data/gannet/ripley/R/packages/tests-clang/RAQSAPI.Rcheck’ * using R Under development (unstable) (2024-04-24 r86484) * using platform: x86_64-pc-linux-gnu * R was compiled by clang version 18.1.4 flang-new version 18.1.4 * running under: Fedora Linux 36 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘RAQSAPI/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘RAQSAPI’ version ‘2.0.3’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... NOTE Package suggested but not available for checking: ‘goodpractice’ * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘RAQSAPI’ can be installed ... [13s/19s] OK See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-clang/RAQSAPI-00install.html' for details. * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [18s/25s] OK * checking Rd files ... NOTE checkRd: (-1) aqs_annualsummary_by_box.Rd:73: Escaped LaTeX specials: \$ checkRd: (-1) aqs_annualsummary_by_box.Rd:75: Escaped LaTeX specials: \$ checkRd: (-1) aqs_annualsummary_by_cbsa.Rd:54: Escaped LaTeX specials: \$ checkRd: (-1) aqs_annualsummary_by_cbsa.Rd:55: Escaped LaTeX specials: \$ checkRd: (-1) aqs_annualsummary_by_county.Rd:64: Escaped LaTeX specials: \$ checkRd: (-1) aqs_annualsummary_by_county.Rd:65: Escaped LaTeX specials: \$ checkRd: (-1) aqs_annualsummary_by_site.Rd:69: Escaped LaTeX specials: \$ checkRd: (-1) aqs_annualsummary_by_site.Rd:70: Escaped LaTeX specials: \$ checkRd: (-1) aqs_annualsummary_by_state.Rd:56: Escaped LaTeX specials: \$ checkRd: (-1) aqs_annualsummary_by_state.Rd:57: Escaped LaTeX specials: \$ checkRd: (-1) aqs_dailysummary_by_box.Rd:75: Escaped LaTeX specials: \$ checkRd: (-1) aqs_dailysummary_by_box.Rd:76: Escaped LaTeX specials: \$ checkRd: (-1) aqs_dailysummary_by_cbsa.Rd:55: Escaped LaTeX specials: \$ checkRd: (-1) aqs_dailysummary_by_cbsa.Rd:56: Escaped LaTeX specials: \$ checkRd: (-1) aqs_dailysummary_by_county.Rd:64: Escaped LaTeX specials: \$ checkRd: (-1) aqs_dailysummary_by_county.Rd:65: Escaped LaTeX specials: \$ checkRd: (-1) aqs_dailysummary_by_site.Rd:68: Escaped LaTeX specials: \$ checkRd: (-1) aqs_dailysummary_by_site.Rd:69: Escaped LaTeX specials: \$ checkRd: (-1) aqs_dailysummary_by_state.Rd:57: Escaped LaTeX specials: \$ checkRd: (-1) aqs_dailysummary_by_state.Rd:58: Escaped LaTeX specials: \$ checkRd: (-1) aqs_monitors_by_cbsa.Rd:55: Escaped LaTeX specials: \$ checkRd: (-1) aqs_monitors_by_cbsa.Rd:56: Escaped LaTeX specials: \$ checkRd: (-1) aqs_qa_flowrateaudit_by_MA.Rd:55: Escaped LaTeX specials: \$ checkRd: (-1) aqs_qa_flowrateaudit_by_MA.Rd:56: Escaped LaTeX specials: \$ checkRd: (-1) aqs_qa_flowrateaudit_by_county.Rd:64: Escaped LaTeX specials: \$ checkRd: (-1) aqs_qa_flowrateaudit_by_county.Rd:65: Escaped LaTeX specials: \$ checkRd: (-1) aqs_qa_flowrateaudit_by_pqao.Rd:55: Escaped LaTeX specials: \$ checkRd: (-1) aqs_qa_flowrateaudit_by_pqao.Rd:56: Escaped LaTeX specials: \$ checkRd: (-1) aqs_qa_flowrateaudit_by_site.Rd:68: Escaped LaTeX specials: \$ checkRd: (-1) aqs_qa_flowrateaudit_by_site.Rd:69: Escaped LaTeX specials: \$ checkRd: (-1) aqs_qa_flowrateaudit_by_state.Rd:57: Escaped LaTeX specials: \$ checkRd: (-1) aqs_qa_flowrateaudit_by_state.Rd:58: Escaped LaTeX specials: \$ checkRd: (-1) aqs_qa_one_point_qc_by_MA.Rd:54: Escaped LaTeX specials: \$ checkRd: (-1) aqs_qa_one_point_qc_by_MA.Rd:56: Escaped LaTeX specials: \$ checkRd: (-1) aqs_qa_one_point_qc_by_county.Rd:63: Escaped LaTeX specials: \$ checkRd: (-1) aqs_qa_one_point_qc_by_county.Rd:65: Escaped LaTeX specials: \$ checkRd: (-1) aqs_qa_one_point_qc_by_pqao.Rd:54: Escaped LaTeX specials: \$ checkRd: (-1) aqs_qa_one_point_qc_by_site.Rd:67: Escaped LaTeX specials: \$ checkRd: (-1) aqs_qa_one_point_qc_by_site.Rd:69: Escaped LaTeX specials: \$ checkRd: (-1) aqs_qa_one_point_qc_by_state.Rd:56: Escaped LaTeX specials: \$ checkRd: (-1) aqs_qa_one_point_qc_by_state.Rd:58: Escaped LaTeX specials: \$ checkRd: (-1) aqs_qa_pep_audit_by_MA.Rd:55: Escaped LaTeX specials: \$ checkRd: (-1) aqs_qa_pep_audit_by_MA.Rd:56: Escaped LaTeX specials: \$ checkRd: (-1) aqs_qa_pep_audit_by_county.Rd:63: Escaped LaTeX specials: \$ checkRd: (-1) aqs_qa_pep_audit_by_county.Rd:65: Escaped LaTeX specials: \$ checkRd: (-1) aqs_qa_pep_audit_by_pqao.Rd:55: Escaped LaTeX specials: \$ checkRd: (-1) aqs_qa_pep_audit_by_pqao.Rd:56: Escaped LaTeX specials: \$ checkRd: (-1) aqs_qa_pep_audit_by_site.Rd:67: Escaped LaTeX specials: \$ checkRd: (-1) aqs_qa_pep_audit_by_site.Rd:69: Escaped LaTeX specials: \$ checkRd: (-1) aqs_qa_pep_audit_by_state.Rd:56: Escaped LaTeX specials: \$ checkRd: (-1) aqs_qa_pep_audit_by_state.Rd:58: Escaped LaTeX specials: \$ checkRd: (-1) aqs_quarterlysummary_by_box.Rd:75: Escaped LaTeX specials: \$ checkRd: (-1) aqs_quarterlysummary_by_box.Rd:76: Escaped LaTeX specials: \$ checkRd: (-1) aqs_quarterlysummary_by_cbsa.Rd:56: Escaped LaTeX specials: \$ checkRd: (-1) aqs_quarterlysummary_by_cbsa.Rd:57: Escaped LaTeX specials: \$ checkRd: (-1) aqs_quarterlysummary_by_county.Rd:64: Escaped LaTeX specials: \$ checkRd: (-1) aqs_quarterlysummary_by_county.Rd:65: Escaped LaTeX specials: \$ checkRd: (-1) aqs_quarterlysummary_by_site.Rd:68: Escaped LaTeX specials: \$ checkRd: (-1) aqs_quarterlysummary_by_site.Rd:69: Escaped LaTeX specials: \$ checkRd: (-1) aqs_quarterlysummary_by_state.Rd:57: Escaped LaTeX specials: \$ checkRd: (-1) aqs_quarterlysummary_by_state.Rd:58: Escaped LaTeX specials: \$ checkRd: (-1) aqs_sampledurations.Rd:25: Lost braces; missing escapes or markup? 25 | durations such as 8 hour CO or O${_3}$ rolling averages, 3/6 | ^ * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... OK Running ‘spelling.R’ Running ‘testthat.R’ * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [25s/39s] OK * checking PDF version of manual ... [18s/26s] OK * checking HTML version of manual ... [10s/17s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 2 NOTEs