* installing *source* package ‘PhaseType’ ...
** package ‘PhaseType’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 18.1.4’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/PhaseType/src'
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c PHT_MCMC_Aslett.c -o PHT_MCMC_Aslett.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c Registrations.c -o Registrations.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c Simulate_AbsCTMC_eq_AslettHobolth_DCS.c -o Simulate_AbsCTMC_eq_AslettHobolth_DCS.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c Simulate_AbsCTMC_eq_Aslett_DCS.c -o Simulate_AbsCTMC_eq_Aslett_DCS.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c Simulate_AbsCTMC_eq_Aslett_ECS.c -o Simulate_AbsCTMC_eq_Aslett_ECS.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c Simulate_AbsCTMC_eq_Bladt_MHRS.c -o Simulate_AbsCTMC_eq_Bladt_MHRS.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c Simulate_AbsCTMC_gt_Aslett_DCS.c -o Simulate_AbsCTMC_gt_Aslett_DCS.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c Simulate_AbsCTMC_gt_Bladt_MHRS.c -o Simulate_AbsCTMC_gt_Bladt_MHRS.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c Simulate_AbsCTMC_gt_Hobolth_DCS.c -o Simulate_AbsCTMC_gt_Hobolth_DCS.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c arms.c -o arms.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c utility.c -o utility.o
/usr/local/clang18/bin/clang -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o PhaseType.so PHT_MCMC_Aslett.o Registrations.o Simulate_AbsCTMC_eq_AslettHobolth_DCS.o Simulate_AbsCTMC_eq_Aslett_DCS.o Simulate_AbsCTMC_eq_Aslett_ECS.o Simulate_AbsCTMC_eq_Bladt_MHRS.o Simulate_AbsCTMC_gt_Aslett_DCS.o Simulate_AbsCTMC_gt_Bladt_MHRS.o Simulate_AbsCTMC_gt_Hobolth_DCS.o arms.o utility.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortran_main -lFortranRuntime -lFortranDecimal -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/PhaseType/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/PhaseType/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/PhaseType/src'
installing to /data/gannet/ripley/R/packages/tests-clang/PhaseType.Rcheck/00LOCK-PhaseType/00new/PhaseType/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (PhaseType)