* installing *source* package ‘Phase123’ ... ** package ‘Phase123’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘clang version 18.1.4’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/Phase123/src' /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c PHASE123CODE.cpp -o PHASE123CODE.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RcppExports.cpp -o RcppExports.o In file included from PHASE123CODE.cpp:5: In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57: In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo:26: /data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:321:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages] 321 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ /data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:326:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages] 326 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ /data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/config.hpp:329:11: warning: INFO: see the documentation for details [-W#pragma-messages] 329 | #pragma message ("INFO: see the documentation for details") | ^ PHASE123CODE.cpp:106:7: warning: unused variable 'm' [-Wunused-variable] 106 | int m=0; | ^ PHASE123CODE.cpp:625:7: warning: unused variable 'Count' [-Wunused-variable] 625 | int Count=0; | ^~~~~ PHASE123CODE.cpp:635:7: warning: unused variable 'nREP' [-Wunused-variable] 635 | int nREP=0; | ^~~~ PHASE123CODE.cpp:678:10: warning: unused variable 'min1' [-Wunused-variable] 678 | double min1=0; | ^~~~ PHASE123CODE.cpp:1517:7: warning: unused variable 'Count' [-Wunused-variable] 1517 | int Count=0; | ^~~~~ PHASE123CODE.cpp:1527:7: warning: unused variable 'nREP' [-Wunused-variable] 1527 | int nREP=0; | ^~~~ PHASE123CODE.cpp:1550:7: warning: unused variable 'm' [-Wunused-variable] 1550 | int m=0; | ^ PHASE123CODE.cpp:1567:7: warning: variable 'STOPPED' set but not used [-Wunused-but-set-variable] 1567 | int STOPPED=0; | ^ PHASE123CODE.cpp:1568:7: warning: unused variable 'i' [-Wunused-variable] 1568 | int i=0; | ^ PHASE123CODE.cpp:1570:10: warning: unused variable 'min1' [-Wunused-variable] 1570 | double min1=0; | ^~~~ PHASE123CODE.cpp:1574:7: warning: unused variable 'nRep' [-Wunused-variable] 1574 | int nRep=0; | ^~~~ PHASE123CODE.cpp:2001:7: warning: unused variable 'Count' [-Wunused-variable] 2001 | int Count=0; | ^~~~~ PHASE123CODE.cpp:2011:7: warning: unused variable 'nREP' [-Wunused-variable] 2011 | int nREP=0; | ^~~~ PHASE123CODE.cpp:2034:7: warning: unused variable 'm' [-Wunused-variable] 2034 | int m=0; | ^ PHASE123CODE.cpp:2051:7: warning: variable 'STOPPED' set but not used [-Wunused-but-set-variable] 2051 | int STOPPED=0; | ^ PHASE123CODE.cpp:2052:7: warning: unused variable 'i' [-Wunused-variable] 2052 | int i=0; | ^ PHASE123CODE.cpp:2054:10: warning: unused variable 'min1' [-Wunused-variable] 2054 | double min1=0; | ^~~~ PHASE123CODE.cpp:2058:7: warning: unused variable 'nRep' [-Wunused-variable] 2058 | int nRep=0; | ^~~~ PHASE123CODE.cpp:2492:7: warning: unused variable 'b' [-Wunused-variable] 2492 | int b=0; | ^ PHASE123CODE.cpp:2496:7: warning: unused variable 'B1' [-Wunused-variable] 2496 | int B1=B; | ^~ PHASE123CODE.cpp:3540:7: warning: unused variable 'm' [-Wunused-variable] 3540 | int m=0; | ^ 24 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o Phase123.so PHASE123CODE.o RcppExports.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortran_main -lFortranRuntime -lFortranDecimal -lm -fopenmp make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/Phase123/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/Phase123/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/Phase123/src' installing to /data/gannet/ripley/R/packages/tests-clang/Phase123.Rcheck/00LOCK-Phase123/00new/Phase123/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Phase123)