* installing *source* package ‘PKPDsim’ ... ** package ‘PKPDsim’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘clang version 18.1.4’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/PKPDsim/src' /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RcppExports.cpp -o RcppExports.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c pk_1cmt_iv_bolus.cpp -o pk_1cmt_iv_bolus.o pk_1cmt_iv_bolus.cpp:20:30: warning: unused variable 'it' [-Wunused-variable] 20 | std::vector::iterator it; | ^~ 1 warning generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c pk_1cmt_iv_bolus_covariates.cpp -o pk_1cmt_iv_bolus_covariates.o pk_1cmt_iv_bolus_covariates.cpp:8:10: warning: unused variable 'CLi' [-Wunused-variable] 8 | double CLi, Vi, tmp; | ^~~ pk_1cmt_iv_bolus_covariates.cpp:8:15: warning: unused variable 'Vi' [-Wunused-variable] 8 | double CLi, Vi, tmp; | ^~ pk_1cmt_iv_bolus_covariates.cpp:8:19: warning: unused variable 'tmp' [-Wunused-variable] 8 | double CLi, Vi, tmp; | ^~~ pk_1cmt_iv_bolus_covariates.cpp:12:10: warning: unused variable 'CL' [-Wunused-variable] 12 | double CL = parameters["CL"]; | ^~ pk_1cmt_iv_bolus_covariates.cpp:13:10: warning: unused variable 'V' [-Wunused-variable] 13 | double V = parameters["V"]; | ^ pk_1cmt_iv_bolus_covariates.cpp:23:30: warning: unused variable 'it' [-Wunused-variable] 23 | std::vector::iterator it; | ^~ 6 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c pk_1cmt_iv_infusion.cpp -o pk_1cmt_iv_infusion.o pk_1cmt_iv_infusion.cpp:20:30: warning: unused variable 'it' [-Wunused-variable] 20 | std::vector::iterator it; | ^~ 1 warning generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c pk_1cmt_oral.cpp -o pk_1cmt_oral.o pk_1cmt_oral.cpp:25:30: warning: unused variable 'it' [-Wunused-variable] 25 | std::vector::iterator it; | ^~ /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c pk_2cmt_iv_bolus.cpp -o pk_2cmt_iv_bolus.o 1 warning generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c pk_2cmt_iv_infusion.cpp -o pk_2cmt_iv_infusion.o pk_2cmt_iv_bolus.cpp:24:30: warning: unused variable 'it' [-Wunused-variable] 24 | std::vector::iterator it; | ^~ 1 warning generated. pk_2cmt_iv_infusion.cpp:25:30: warning: unused variable 'it' [-Wunused-variable] 25 | std::vector::iterator it; | ^~ /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c pk_2cmt_oral.cpp -o pk_2cmt_oral.o 1 warning generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c pk_3cmt_iv_bolus.cpp -o pk_3cmt_iv_bolus.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c pk_3cmt_iv_infusion.cpp -o pk_3cmt_iv_infusion.o pk_2cmt_oral.cpp:8:14: warning: unused variable 'k10' [-Wunused-variable] 8 | double ka, k10, k20, k30, k23, k32, E1, E2, E3, lambda1, lambda2, t, A1last, A2last, A3last, A2term1, A2term2, A3term1, A3term2; | ^~~ pk_2cmt_oral.cpp:8:39: warning: unused variable 'E1' [-Wunused-variable] 8 | double ka, k10, k20, k30, k23, k32, E1, E2, E3, lambda1, lambda2, t, A1last, A2last, A3last, A2term1, A2term2, A3term1, A3term2; | ^~ pk_2cmt_oral.cpp:29:30: warning: unused variable 'it' [-Wunused-variable] 29 | std::vector::iterator it; | ^~ pk_3cmt_iv_bolus.cpp:30:30: warning: unused variable 'it' [-Wunused-variable] 30 | std::vector::iterator it; | ^~ 3 warnings generated. 1 warning generated. pk_3cmt_iv_infusion.cpp:31:30: warning: unused variable 'it' [-Wunused-variable] 31 | std::vector::iterator it; | ^~ /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c pk_3cmt_oral.cpp -o pk_3cmt_oral.o 1 warning generated. pk_3cmt_oral.cpp:8:14: warning: unused variable 'k10' [-Wunused-variable] 8 | double ka, k10, k20, k23, k32, k24, k42, k30, k40, E1, E2, E3, E4; | ^~~ pk_3cmt_oral.cpp:8:54: warning: unused variable 'E1' [-Wunused-variable] 8 | double ka, k10, k20, k23, k32, k24, k42, k30, k40, E1, E2, E3, E4; | ^~ pk_3cmt_oral.cpp:10:42: warning: unused variable 'A1term1' [-Wunused-variable] 10 | double A1last, A2last, A3last, A4last, A1term1, A1term2, A2term1, A2term2, A2term3, A3term1, A3term2, A3term3, A4term1, A4term2, A4term3; | ^~~~~~~ pk_3cmt_oral.cpp:10:51: warning: unused variable 'A1term2' [-Wunused-variable] 10 | double A1last, A2last, A3last, A4last, A1term1, A1term2, A2term1, A2term2, A2term3, A3term1, A3term2, A3term3, A4term1, A4term2, A4term3; | ^~~~~~~ pk_3cmt_oral.cpp:35:30: warning: unused variable 'it' [-Wunused-variable] 35 | std::vector::iterator it; | ^~ 5 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o PKPDsim.so RcppExports.o pk_1cmt_iv_bolus.o pk_1cmt_iv_bolus_covariates.o pk_1cmt_iv_infusion.o pk_1cmt_oral.o pk_2cmt_iv_bolus.o pk_2cmt_iv_infusion.o pk_2cmt_oral.o pk_3cmt_iv_bolus.o pk_3cmt_iv_infusion.o pk_3cmt_oral.o make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/PKPDsim/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/PKPDsim/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/PKPDsim/src' installing to /data/gannet/ripley/R/packages/tests-clang/PKPDsim.Rcheck/00LOCK-PKPDsim/00new/PKPDsim/libs ** R ** data *** moving datasets to lazyload DB ** exec ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PKPDsim)