* installing *source* package ‘NAIR’ ... ** package ‘NAIR’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘clang version 18.1.4’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/NAIR/src' /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -DARMA_64BIT_WORD=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RcppExports.cpp -o RcppExports.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -DARMA_64BIT_WORD=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c dropDegreeZero.cpp -o dropDegreeZero.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -DARMA_64BIT_WORD=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c hamAdjacencyMatSparse.cpp -o hamAdjacencyMatSparse.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -DARMA_64BIT_WORD=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c hamDistBounded.cpp -o hamDistBounded.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -DARMA_64BIT_WORD=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c levAdjacencyMatSparse.cpp -o levAdjacencyMatSparse.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -DARMA_64BIT_WORD=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c levDistBounded.cpp -o levDistBounded.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -DARMA_64BIT_WORD=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c patternAdjacencyMatSparse.cpp -o patternAdjacencyMatSparse.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -DARMA_64BIT_WORD=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c sortAdjacencyMatSparse.cpp -o sortAdjacencyMatSparse.o In file included from hamAdjacencyMatSparse.cpp:20: ./dropDegreeZero.h:4:9: warning: 'ARMA_64BIT_WORD' macro redefined [-Wmacro-redefined] 4 | #define ARMA_64BIT_WORD 1 | ^ /data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/compiler_setup.hpp:88:11: note: previous definition is here 88 | #define ARMA_64BIT_WORD | ^ 1 warning generated. In file included from levAdjacencyMatSparse.cpp:20: ./dropDegreeZero.h:4:9: warning: 'ARMA_64BIT_WORD' macro redefined [-Wmacro-redefined] 4 | #define ARMA_64BIT_WORD 1 | ^ /data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/compiler_setup.hpp:88:11: note: previous definition is here 88 | #define ARMA_64BIT_WORD | ^ 1 warning generated. In file included from sortAdjacencyMatSparse.cpp:24: ./dropDegreeZero.h:4:9: warning: 'ARMA_64BIT_WORD' macro redefined [-Wmacro-redefined] 4 | #define ARMA_64BIT_WORD 1 | ^ /data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/compiler_setup.hpp:88:11: note: previous definition is here 88 | #define ARMA_64BIT_WORD | ^ 1 warning generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o NAIR.so RcppExports.o dropDegreeZero.o hamAdjacencyMatSparse.o hamDistBounded.o levAdjacencyMatSparse.o levDistBounded.o patternAdjacencyMatSparse.o sortAdjacencyMatSparse.o -fopenmp -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortran_main -lFortranRuntime -lFortranDecimal -lm make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/NAIR/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/NAIR/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/NAIR/src' installing to /data/gannet/ripley/R/packages/tests-clang/NAIR.Rcheck/00LOCK-NAIR/00new/NAIR/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (NAIR)