Install log for 'NAIR'

* installing *source* package ‘NAIR’ ...
** package ‘NAIR’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 18.1.4’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/NAIR/src'
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD=1 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c RcppExports.cpp -o RcppExports.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD=1 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c dropDegreeZero.cpp -o dropDegreeZero.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD=1 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c hamAdjacencyMatSparse.cpp -o hamAdjacencyMatSparse.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD=1 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c hamDistBounded.cpp -o hamDistBounded.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD=1 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c levAdjacencyMatSparse.cpp -o levAdjacencyMatSparse.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD=1 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c levDistBounded.cpp -o levDistBounded.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD=1 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c patternAdjacencyMatSparse.cpp -o patternAdjacencyMatSparse.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD=1 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c sortAdjacencyMatSparse.cpp -o sortAdjacencyMatSparse.o
In file included from hamAdjacencyMatSparse.cpp:20:
./dropDegreeZero.h:4:9: warning: 'ARMA_64BIT_WORD' macro redefined [-Wmacro-redefined]
    4 | #define ARMA_64BIT_WORD 1
      |         ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/compiler_setup.hpp:88:11: note: previous definition is here
   88 |   #define ARMA_64BIT_WORD
      |           ^
1 warning generated.
In file included from levAdjacencyMatSparse.cpp:20:
./dropDegreeZero.h:4:9: warning: 'ARMA_64BIT_WORD' macro redefined [-Wmacro-redefined]
    4 | #define ARMA_64BIT_WORD 1
      |         ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/compiler_setup.hpp:88:11: note: previous definition is here
   88 |   #define ARMA_64BIT_WORD
      |           ^
1 warning generated.
In file included from sortAdjacencyMatSparse.cpp:24:
./dropDegreeZero.h:4:9: warning: 'ARMA_64BIT_WORD' macro redefined [-Wmacro-redefined]
    4 | #define ARMA_64BIT_WORD 1
      |         ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/compiler_setup.hpp:88:11: note: previous definition is here
   88 |   #define ARMA_64BIT_WORD
      |           ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o NAIR.so RcppExports.o dropDegreeZero.o hamAdjacencyMatSparse.o hamDistBounded.o levAdjacencyMatSparse.o levDistBounded.o patternAdjacencyMatSparse.o sortAdjacencyMatSparse.o -fopenmp -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortran_main -lFortranRuntime -lFortranDecimal -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/NAIR/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/NAIR/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/NAIR/src'
installing to /data/gannet/ripley/R/packages/tests-clang/NAIR.Rcheck/00LOCK-NAIR/00new/NAIR/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (NAIR)