* installing *source* package ‘MatrixExtra’ ... ** package ‘MatrixExtra’ successfully unpacked and MD5 sums checked ** using staged installation checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether /usr/local/clang18/bin/clang++ -std=gnu++17 accepts -g... yes checking for /usr/local/clang18/bin/clang++ -std=gnu++17 option to enable C++11 features... none needed configure: creating ./config.status config.status: creating src/Makevars ** libs using C++ compiler: ‘clang version 18.1.4’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/MatrixExtra/src' /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DUSE_ROBINMAP -DHAS_LD=1 -DSUPPORTS_RESTRICT=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fno-trapping-math -fno-math-errno -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RcppExports.cpp -o RcppExports.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DUSE_ROBINMAP -DHAS_LD=1 -DSUPPORTS_RESTRICT=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fno-trapping-math -fno-math-errno -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c assignment.cpp -o assignment.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DUSE_ROBINMAP -DHAS_LD=1 -DSUPPORTS_RESTRICT=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fno-trapping-math -fno-math-errno -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c cbind.cpp -o cbind.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DUSE_ROBINMAP -DHAS_LD=1 -DSUPPORTS_RESTRICT=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fno-trapping-math -fno-math-errno -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c matmul.cpp -o matmul.o matmul.cpp:59:20: warning: unused function 'axpy' [-Wunused-function] 59 | static inline void axpy(const int *n, const float alpha, const float *x, const int* incx, float* y, const int* incy) | ^~~~ 1 warning generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DUSE_ROBINMAP -DHAS_LD=1 -DSUPPORTS_RESTRICT=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fno-trapping-math -fno-math-errno -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c misc.cpp -o misc.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DUSE_ROBINMAP -DHAS_LD=1 -DSUPPORTS_RESTRICT=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fno-trapping-math -fno-math-errno -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c operators.cpp -o operators.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DUSE_ROBINMAP -DHAS_LD=1 -DSUPPORTS_RESTRICT=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fno-trapping-math -fno-math-errno -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c rbind.cpp -o rbind.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DUSE_ROBINMAP -DHAS_LD=1 -DSUPPORTS_RESTRICT=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fno-trapping-math -fno-math-errno -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c slice.cpp -o slice.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DUSE_ROBINMAP -DHAS_LD=1 -DSUPPORTS_RESTRICT=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fno-trapping-math -fno-math-errno -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c slice_coo.cpp -o slice_coo.o /usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o MatrixExtra.so RcppExports.o assignment.o cbind.o matmul.o misc.o operators.o rbind.o slice.o slice_coo.o -fopenmp -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortran_main -lFortranRuntime -lFortranDecimal -lm make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/MatrixExtra/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/MatrixExtra/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/MatrixExtra/src' installing to /data/gannet/ripley/R/packages/tests-clang/MatrixExtra.Rcheck/00LOCK-MatrixExtra/00new/MatrixExtra/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MatrixExtra)