* installing *source* package ‘LogConcDEAD’ ...
** package ‘LogConcDEAD’ successfully unpacked and MD5 sums checked
** using staged installation
checking for gcc... /usr/local/clang18/bin/clang
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /usr/local/clang18/bin/clang accepts -g... yes
checking for /usr/local/clang18/bin/clang option to accept ISO C89... none needed
checking whether /usr/local/clang18/bin/clang understands -fno-strict-aliasing... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘clang version 18.1.4’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/LogConcDEAD/src'
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fno-strict-aliasing -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c LogConcDEAD_init.c -o LogConcDEAD_init.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fno-strict-aliasing -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c convhull.c -o convhull.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fno-strict-aliasing -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c convhullnmlc.c -o convhullnmlc.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fno-strict-aliasing -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c delaunayn.c -o delaunayn.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fno-strict-aliasing -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c geom.c -o geom.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fno-strict-aliasing -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c geom2.c -o geom2.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fno-strict-aliasing -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c global.c -o global.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fno-strict-aliasing -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c io.c -o io.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fno-strict-aliasing -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c logconweights.c -o logconweights.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fno-strict-aliasing -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c mem.c -o mem.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fno-strict-aliasing -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c merge.c -o merge.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fno-strict-aliasing -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c poly.c -o poly.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fno-strict-aliasing -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c poly2.c -o poly2.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fno-strict-aliasing -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c qhull.c -o qhull.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fno-strict-aliasing -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c qset.c -o qset.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fno-strict-aliasing -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c renormalise.c -o renormalise.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fno-strict-aliasing -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c sigmaeffw.c -o sigmaeffw.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fno-strict-aliasing -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c solvoptweights.c -o solvoptweights.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fno-strict-aliasing -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c stat.c -o stat.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fno-strict-aliasing -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c subgradeffw.c -o subgradeffw.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fno-strict-aliasing -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c useful.c -o useful.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include   -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fno-strict-aliasing -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c user.c -o user.o
/usr/local/clang18/bin/clang -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o LogConcDEAD.so LogConcDEAD_init.o convhull.o convhullnmlc.o delaunayn.o geom.o geom2.o global.o io.o logconweights.o mem.o merge.o poly.o poly2.o qhull.o qset.o renormalise.o sigmaeffw.o solvoptweights.o stat.o subgradeffw.o useful.o user.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortran_main -lFortranRuntime -lFortranDecimal -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/LogConcDEAD/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/LogConcDEAD/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/LogConcDEAD/src'
installing to /data/gannet/ripley/R/packages/tests-clang/LogConcDEAD.Rcheck/00LOCK-LogConcDEAD/00new/LogConcDEAD/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (LogConcDEAD)