* installing *source* package ‘LibOPF’ ... ** package ‘LibOPF’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘clang version 18.1.4’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/LibOPF/src' /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c code/opf_split.c -o code/opf_split.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c code/opf_accuracy.c -o code/opf_accuracy.o code/opf_accuracy.c:18:13: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] 18 | float Acc, tmp; | ^ 1 warning generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c code/opf_accuracy4label.c -o code/opf_accuracy4label.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c code/opf_train.c -o code/opf_train.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c code/opf_semi.c -o code/opf_semi.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c code/opf_classify.c -o code/opf_classify.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c code/opf_learn.c -o code/opf_learn.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c code/opf_distance.c -o code/opf_distance.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c code/opf_info.c -o code/opf_info.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c code/opf_fold.c -o code/opf_fold.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c code/opf_merge.c -o code/opf_merge.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c code/opf_cluster.c -o code/opf_cluster.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c code/opf_pruning.c -o code/opf_pruning.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c code/opf_normalize.c -o code/opf_normalize.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c code/opfknn_train.c -o code/opfknn_train.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c code/opfknn_classify.c -o code/opfknn_classify.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c init.c -o init.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c tools/src/txt2opf.c -o tools/src/txt2opf.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c tools/src/opf2txt.c -o tools/src/opf2txt.o tools/src/opf2txt.c:21:9: warning: variable 'result' set but not used [-Wunused-but-set-variable] 21 | size_t result = 0; | ^ 1 warning generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c tools/src/opf_check.c -o tools/src/opf_check.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c tools/src/opf2svm.c -o tools/src/opf2svm.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c tools/src/svm2opf.c -o tools/src/svm2opf.o /usr/local/clang18/bin/clang -O3 -Wall -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -c ./code/util/common.c -o ./code/util/common.o -fPIC /usr/local/clang18/bin/clang -O3 -Wall -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -c ./code/util/set.c -o ./code/util/set.o -fPIC /usr/local/clang18/bin/clang -O3 -Wall -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -c ./code/util/gqueue.c -o ./code/util/gqueue.o -fPIC /usr/local/clang18/bin/clang -O3 -Wall -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -c ./code/util/realheap.c -o ./code/util/realheap.o -fPIC /usr/local/clang18/bin/clang -O3 -Wall -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -c ./code/util/sgctree.c -o ./code/util/sgctree.o -fPIC /usr/local/clang18/bin/clang -O3 -Wall -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -c ./code/util/subgraph.c -o ./code/util/subgraph.o -fPIC /usr/local/clang18/bin/clang -O3 -Wall -c ./code/OPF.c -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -o ./code/util/OPF.o -fPIC ./code/OPF.c:424:19: warning: implicit conversion from 'int' to 'float' changes value from 2147483647 to 2147483648 [-Wimplicit-const-int-float-conversion] 424 | if (d[l] != INT_MAX) | ~~ ^~~~~~~ /usr/local/clang18/lib/clang/18/include/limits.h:46:19: note: expanded from macro 'INT_MAX' 46 | #define INT_MAX __INT_MAX__ | ^~~~~~~~~~~ :60:21: note: expanded from macro '__INT_MAX__' 60 | #define __INT_MAX__ 2147483647 | ^~~~~~~~~~ ./code/OPF.c:1180:9: warning: variable 'nproto' set but not used [-Wunused-but-set-variable] 1180 | float nproto; | ^ ./code/OPF.c:1883:19: warning: implicit conversion from 'int' to 'float' changes value from 2147483647 to 2147483648 [-Wimplicit-const-int-float-conversion] 1883 | if (d[l] != INT_MAX) | ~~ ^~~~~~~ /usr/local/clang18/lib/clang/18/include/limits.h:46:19: note: expanded from macro 'INT_MAX' 46 | #define INT_MAX __INT_MAX__ | ^~~~~~~~~~~ :60:21: note: expanded from macro '__INT_MAX__' 60 | #define __INT_MAX__ 2147483647 | ^~~~~~~~~~ 3 warnings generated. ar csr ./include/libOPF.a \ ./code/util/common.o \ ./code/util/set.o \ ./code/util/gqueue.o \ ./code/util/realheap.o \ ./code/util/sgctree.o \ ./code/util/subgraph.o \ ./code/util/OPF.o \ echo "libOPF.a built..." libOPF.a built... /usr/local/clang18/bin/clang -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o LibOPF.so code/opf_split.o code/opf_accuracy.o code/opf_accuracy4label.o code/opf_train.o code/opf_semi.o code/opf_classify.o code/opf_learn.o code/opf_distance.o code/opf_info.o code/opf_fold.o code/opf_merge.o code/opf_cluster.o code/opf_pruning.o code/opf_normalize.o code/opfknn_train.o code/opfknn_classify.o init.o tools/src/txt2opf.o tools/src/opf2txt.o tools/src/opf_check.o tools/src/opf2svm.o tools/src/svm2opf.o -L././include -lOPF -lm make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/LibOPF/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/LibOPF/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/LibOPF/src' installing to /data/gannet/ripley/R/packages/tests-clang/LibOPF.Rcheck/00LOCK-LibOPF/00new/LibOPF/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (LibOPF)