* installing *source* package ‘LibOPF’ ...
** package ‘LibOPF’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 18.1.4’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/LibOPF/src'
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c code/opf_split.c -o code/opf_split.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c code/opf_accuracy.c -o code/opf_accuracy.o
code/opf_accuracy.c:18:13: warning: variable 'tmp' set but not used [-Wunused-but-set-variable]
18 | float Acc, tmp;
| ^
1 warning generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c code/opf_accuracy4label.c -o code/opf_accuracy4label.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c code/opf_train.c -o code/opf_train.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c code/opf_semi.c -o code/opf_semi.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c code/opf_classify.c -o code/opf_classify.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c code/opf_learn.c -o code/opf_learn.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c code/opf_distance.c -o code/opf_distance.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c code/opf_info.c -o code/opf_info.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c code/opf_fold.c -o code/opf_fold.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c code/opf_merge.c -o code/opf_merge.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c code/opf_cluster.c -o code/opf_cluster.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c code/opf_pruning.c -o code/opf_pruning.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c code/opf_normalize.c -o code/opf_normalize.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c code/opfknn_train.c -o code/opfknn_train.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c code/opfknn_classify.c -o code/opfknn_classify.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c init.c -o init.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c tools/src/txt2opf.c -o tools/src/txt2opf.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c tools/src/opf2txt.c -o tools/src/opf2txt.o
tools/src/opf2txt.c:21:9: warning: variable 'result' set but not used [-Wunused-but-set-variable]
21 | size_t result = 0;
| ^
1 warning generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c tools/src/opf_check.c -o tools/src/opf_check.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c tools/src/opf2svm.c -o tools/src/opf2svm.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c tools/src/svm2opf.c -o tools/src/svm2opf.o
/usr/local/clang18/bin/clang -O3 -Wall -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -c ./code/util/common.c -o ./code/util/common.o -fPIC
/usr/local/clang18/bin/clang -O3 -Wall -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -c ./code/util/set.c -o ./code/util/set.o -fPIC
/usr/local/clang18/bin/clang -O3 -Wall -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -c ./code/util/gqueue.c -o ./code/util/gqueue.o -fPIC
/usr/local/clang18/bin/clang -O3 -Wall -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -c ./code/util/realheap.c -o ./code/util/realheap.o -fPIC
/usr/local/clang18/bin/clang -O3 -Wall -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -c ./code/util/sgctree.c -o ./code/util/sgctree.o -fPIC
/usr/local/clang18/bin/clang -O3 -Wall -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -c ./code/util/subgraph.c -o ./code/util/subgraph.o -fPIC
/usr/local/clang18/bin/clang -O3 -Wall -c ./code/OPF.c -I./include -I./include/util -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -o ./code/util/OPF.o -fPIC
./code/OPF.c:424:19: warning: implicit conversion from 'int' to 'float' changes value from 2147483647 to 2147483648 [-Wimplicit-const-int-float-conversion]
424 | if (d[l] != INT_MAX)
| ~~ ^~~~~~~
/usr/local/clang18/lib/clang/18/include/limits.h:46:19: note: expanded from macro 'INT_MAX'
46 | #define INT_MAX __INT_MAX__
| ^~~~~~~~~~~
<built-in>:60:21: note: expanded from macro '__INT_MAX__'
60 | #define __INT_MAX__ 2147483647
| ^~~~~~~~~~
./code/OPF.c:1180:9: warning: variable 'nproto' set but not used [-Wunused-but-set-variable]
1180 | float nproto;
| ^
./code/OPF.c:1883:19: warning: implicit conversion from 'int' to 'float' changes value from 2147483647 to 2147483648 [-Wimplicit-const-int-float-conversion]
1883 | if (d[l] != INT_MAX)
| ~~ ^~~~~~~
/usr/local/clang18/lib/clang/18/include/limits.h:46:19: note: expanded from macro 'INT_MAX'
46 | #define INT_MAX __INT_MAX__
| ^~~~~~~~~~~
<built-in>:60:21: note: expanded from macro '__INT_MAX__'
60 | #define __INT_MAX__ 2147483647
| ^~~~~~~~~~
3 warnings generated.
ar csr ./include/libOPF.a \
./code/util/common.o \
./code/util/set.o \
./code/util/gqueue.o \
./code/util/realheap.o \
./code/util/sgctree.o \
./code/util/subgraph.o \
./code/util/OPF.o \
echo "libOPF.a built..."
libOPF.a built...
/usr/local/clang18/bin/clang -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o LibOPF.so code/opf_split.o code/opf_accuracy.o code/opf_accuracy4label.o code/opf_train.o code/opf_semi.o code/opf_classify.o code/opf_learn.o code/opf_distance.o code/opf_info.o code/opf_fold.o code/opf_merge.o code/opf_cluster.o code/opf_pruning.o code/opf_normalize.o code/opfknn_train.o code/opfknn_classify.o init.o tools/src/txt2opf.o tools/src/opf2txt.o tools/src/opf_check.o tools/src/opf2svm.o tools/src/svm2opf.o -L././include -lOPF -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/LibOPF/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/LibOPF/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/LibOPF/src'
installing to /data/gannet/ripley/R/packages/tests-clang/LibOPF.Rcheck/00LOCK-LibOPF/00new/LibOPF/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (LibOPF)