* installing *source* package ‘LOMAR’ ...
** package ‘LOMAR’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 18.1.4’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/LOMAR/src'
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -DBOOST_DISABLE_THREADS -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c RcppExports.cpp -o RcppExports.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include   -DBOOST_DISABLE_THREADS -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c diag.cpp -o diag.o
In file included from diag.cpp:9:
In file included from ./tdautils/ripsL2.h:5:
In file included from ./topology/rips.h:6:
In file included from ./topology/simplex.h:221:
./topology/simplex.hpp:12:1: warning: 'BoundaryIterator' defined as a struct here but previously declared as a class; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   12 | struct Simplex<V,T>::BoundaryIterator: public boost::iterator_adaptor<BoundaryIterator,                                 // Derived
      | ^
./topology/simplex.h:47:9: note: did you mean struct here?
   47 |         class BoundaryIterator;
      |         ^~~~~
      |         struct
In file included from diag.cpp:9:
In file included from ./tdautils/ripsL2.h:5:
./topology/rips.h:181:3: warning: 'ComparePair' defined as a struct here but previously declared as a class; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
  181 |   struct Rips<Distances_, Simplex_>::ComparePair:
      |   ^
./topology/rips.h:34:9: note: did you mean struct here?
   34 |         class               ComparePair;       
      |         ^~~~~
      |         struct
In file included from diag.cpp:13:
./tdautils/gridUtils.h:183:13: warning: unused variable 'value' [-Wunused-variable]
  183 |      double value, value2;  // max of value and value 2 is the fcn value. 
      |             ^~~~~
./tdautils/gridUtils.h:183:20: warning: unused variable 'value2' [-Wunused-variable]
  183 |      double value, value2;  // max of value and value 2 is the fcn value. 
      |                    ^~~~~~
In file included from diag.cpp:26:
./kde.h:21:16: warning: unused variable 'pi' [-Wunused-variable]
   21 |   const double pi = 3.141592653589793;
      |                ^~
In file included from diag.cpp:9:
In file included from ./tdautils/ripsL2.h:8:
In file included from ./topology/dynamic-persistence.h:332:
./topology/dynamic-persistence.hpp:60:73: warning: unused typedef 'TrailIterator' [-Wunused-local-typedef]
   60 |     typedef                 typename Element::Trail::iterator           TrailIterator;
      |                                                                         ^
6 warnings generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o LOMAR.so RcppExports.o diag.o -lgmp
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/LOMAR/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/LOMAR/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/LOMAR/src'
installing to /data/gannet/ripley/R/packages/tests-clang/LOMAR.Rcheck/00LOCK-LOMAR/00new/LOMAR/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (LOMAR)