* installing *source* package ‘IOHexperimenter’ ... ** package ‘IOHexperimenter’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘clang version 18.1.4’ using C++11 make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/IOHexperimenter/src' /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./Headers -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c IOHprofiler_common.cpp -o IOHprofiler_common.o /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./Headers -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c IOHprofiler_configuration.cpp -o IOHprofiler_configuration.o /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./Headers -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c IOHprofiler_csv_logger.cpp -o IOHprofiler_csv_logger.o /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./Headers -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c IOHprofiler_observer.cpp -o IOHprofiler_observer.o /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./Headers -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c IOHprofiler_random.cpp -o IOHprofiler_random.o In file included from IOHprofiler_csv_logger.cpp:8: In file included from ./Headers/IOHprofiler_csv_logger.h:8: In file included from ./Headers/IOHprofiler_observer.h:9: In file included from ./Headers/IOHprofiler_problem.h:11: In file included from ./Headers/IOHprofiler_transformation.h:10: In file included from ./Headers/coco_transformation.hpp:4: ./Headers/suite_bbob_legacy_code.hpp:111:13: warning: unused function 'bbob2009_compute_rotation' [-Wunused-function] 111 | static void bbob2009_compute_rotation(std::vector > &B, const long seed, const size_t DIM) { | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./Headers/suite_bbob_legacy_code.hpp:138:13: warning: unused function 'bbob2009_copy_rotation_matrix' [-Wunused-function] 138 | static void bbob2009_copy_rotation_matrix(const std::vector > &rot, std::vector > &M, std::vector &b, const size_t DIM) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./Headers/suite_bbob_legacy_code.hpp:153:13: warning: unused function 'bbob2009_compute_xopt' [-Wunused-function] 153 | static void bbob2009_compute_xopt(std::vector &xopt, const long seed, const size_t DIM) { | ^~~~~~~~~~~~~~~~~~~~~ ./Headers/suite_bbob_legacy_code.hpp:166:15: warning: unused function 'bbob2009_compute_fopt' [-Wunused-function] 166 | static double bbob2009_compute_fopt(const size_t function, const size_t instance) { | ^~~~~~~~~~~~~~~~~~~~~ In file included from IOHprofiler_csv_logger.cpp:8: In file included from ./Headers/IOHprofiler_csv_logger.h:8: In file included from ./Headers/IOHprofiler_observer.h:9: In file included from ./Headers/IOHprofiler_problem.h:11: In file included from ./Headers/IOHprofiler_transformation.h:10: In file included from ./Headers/coco_transformation.hpp:5: ./Headers/coco_transformation_vars.hpp:129:13: warning: unused function 'transform_vars_x_hat_generic_evaluate' [-Wunused-function] 129 | static void transform_vars_x_hat_generic_evaluate(std::vector &x, const std::vector &sign_vector) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from IOHprofiler_csv_logger.cpp:8: In file included from ./Headers/IOHprofiler_csv_logger.h:8: In file included from ./Headers/IOHprofiler_observer.h:9: In file included from ./Headers/IOHprofiler_problem.h:11: In file included from ./Headers/IOHprofiler_transformation.h:10: In file included from ./Headers/coco_transformation.hpp:6: ./Headers/coco_transformation_objs.hpp:6:13: warning: unused function 'transform_obj_norm_by_dim_evaluate' [-Wunused-function] 6 | static void transform_obj_norm_by_dim_evaluate(const int dimension,std::vector &y) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./Headers/coco_transformation_objs.hpp:64:13: warning: unused function 'transform_obj_scale_evaluate_function' [-Wunused-function] 64 | static void transform_obj_scale_evaluate_function(std::vector &y, const double factor) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from IOHprofiler_csv_logger.cpp:8: In file included from ./Headers/IOHprofiler_csv_logger.h:8: In file included from ./Headers/IOHprofiler_observer.h:9: In file included from ./Headers/IOHprofiler_problem.h:11: In file included from ./Headers/IOHprofiler_transformation.h:10: ./Headers/coco_transformation.hpp:33:13: warning: unused function 'coco_tranformation_vars' [-Wunused-function] 33 | static void coco_tranformation_vars (std::vector &x, const int problem_id) { | ^~~~~~~~~~~~~~~~~~~~~~~ ./Headers/coco_transformation.hpp:131:13: warning: unused function 'coco_tranformation_objs' [-Wunused-function] 131 | static void coco_tranformation_objs (const std::vector &x, std::vector &y, const int problem_id) { | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from IOHprofiler_observer.cpp:6: In file included from ./Headers/IOHprofiler_observer.h:9: In file included from ./Headers/IOHprofiler_problem.h:11: In file included from ./Headers/IOHprofiler_transformation.h:10: In file included from ./Headers/coco_transformation.hpp:4: ./Headers/suite_bbob_legacy_code.hpp:111:13: warning: unused function 'bbob2009_compute_rotation' [-Wunused-function] 111 | static void bbob2009_compute_rotation(std::vector > &B, const long seed, const size_t DIM) { | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./Headers/suite_bbob_legacy_code.hpp:138:13: warning: unused function 'bbob2009_copy_rotation_matrix' [-Wunused-function] 138 | static void bbob2009_copy_rotation_matrix(const std::vector > &rot, std::vector > &M, std::vector &b, const size_t DIM) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./Headers/suite_bbob_legacy_code.hpp:153:13: warning: unused function 'bbob2009_compute_xopt' [-Wunused-function] 153 | static void bbob2009_compute_xopt(std::vector &xopt, const long seed, const size_t DIM) { | ^~~~~~~~~~~~~~~~~~~~~ ./Headers/suite_bbob_legacy_code.hpp:166:15: warning: unused function 'bbob2009_compute_fopt' [-Wunused-function] 166 | static double bbob2009_compute_fopt(const size_t function, const size_t instance) { | ^~~~~~~~~~~~~~~~~~~~~ In file included from IOHprofiler_observer.cpp:6: In file included from ./Headers/IOHprofiler_observer.h:9: In file included from ./Headers/IOHprofiler_problem.h:11: In file included from ./Headers/IOHprofiler_transformation.h:10: In file included from ./Headers/coco_transformation.hpp:5: ./Headers/coco_transformation_vars.hpp:129:13: warning: unused function 'transform_vars_x_hat_generic_evaluate' [-Wunused-function] 129 | static void transform_vars_x_hat_generic_evaluate(std::vector &x, const std::vector &sign_vector) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from IOHprofiler_observer.cpp:6: In file included from ./Headers/IOHprofiler_observer.h:9: In file included from ./Headers/IOHprofiler_problem.h:11: In file included from ./Headers/IOHprofiler_transformation.h:10: In file included from ./Headers/coco_transformation.hpp:6: ./Headers/coco_transformation_objs.hpp:6:13: warning: unused function 'transform_obj_norm_by_dim_evaluate' [-Wunused-function] 6 | static void transform_obj_norm_by_dim_evaluate(const int dimension,std::vector &y) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./Headers/coco_transformation_objs.hpp:64:13: warning: unused function 'transform_obj_scale_evaluate_function' [-Wunused-function] 64 | static void transform_obj_scale_evaluate_function(std::vector &y, const double factor) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from IOHprofiler_observer.cpp:6: In file included from ./Headers/IOHprofiler_observer.h:9: In file included from ./Headers/IOHprofiler_problem.h:11: In file included from ./Headers/IOHprofiler_transformation.h:10: ./Headers/coco_transformation.hpp:33:13: warning: unused function 'coco_tranformation_vars' [-Wunused-function] 33 | static void coco_tranformation_vars (std::vector &x, const int problem_id) { | ^~~~~~~~~~~~~~~~~~~~~~~ ./Headers/coco_transformation.hpp:131:13: warning: unused function 'coco_tranformation_objs' [-Wunused-function] 131 | static void coco_tranformation_objs (const std::vector &x, std::vector &y, const int problem_id) { | ^~~~~~~~~~~~~~~~~~~~~~~ 9 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./Headers -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c IOHprofiler_transformation.cpp -o IOHprofiler_transformation.o /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./Headers -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RcppExports.cpp -o RcppExports.o 9 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./Headers -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c coco_transformation.cpp -o coco_transformation.o In file included from IOHprofiler_transformation.cpp:9: In file included from ./Headers/IOHprofiler_transformation.h:10: In file included from ./Headers/coco_transformation.hpp:4: ./Headers/suite_bbob_legacy_code.hpp:111:13: warning: unused function 'bbob2009_compute_rotation' [-Wunused-function] 111 | static void bbob2009_compute_rotation(std::vector > &B, const long seed, const size_t DIM) { | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./Headers/suite_bbob_legacy_code.hpp:138:13: warning: unused function 'bbob2009_copy_rotation_matrix' [-Wunused-function] 138 | static void bbob2009_copy_rotation_matrix(const std::vector > &rot, std::vector > &M, std::vector &b, const size_t DIM) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./Headers/suite_bbob_legacy_code.hpp:153:13: warning: unused function 'bbob2009_compute_xopt' [-Wunused-function] 153 | static void bbob2009_compute_xopt(std::vector &xopt, const long seed, const size_t DIM) { | ^~~~~~~~~~~~~~~~~~~~~ ./Headers/suite_bbob_legacy_code.hpp:166:15: warning: unused function 'bbob2009_compute_fopt' [-Wunused-function] 166 | static double bbob2009_compute_fopt(const size_t function, const size_t instance) { | ^~~~~~~~~~~~~~~~~~~~~ In file included from IOHprofiler_transformation.cpp:9: In file included from ./Headers/IOHprofiler_transformation.h:10: In file included from ./Headers/coco_transformation.hpp:5: ./Headers/coco_transformation_vars.hpp:129:13: warning: unused function 'transform_vars_x_hat_generic_evaluate' [-Wunused-function] 129 | static void transform_vars_x_hat_generic_evaluate(std::vector &x, const std::vector &sign_vector) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from IOHprofiler_transformation.cpp:9: In file included from ./Headers/IOHprofiler_transformation.h:10: In file included from ./Headers/coco_transformation.hpp:6: ./Headers/coco_transformation_objs.hpp:6:13: warning: unused function 'transform_obj_norm_by_dim_evaluate' [-Wunused-function] 6 | static void transform_obj_norm_by_dim_evaluate(const int dimension,std::vector &y) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./Headers/coco_transformation_objs.hpp:64:13: warning: unused function 'transform_obj_scale_evaluate_function' [-Wunused-function] 64 | static void transform_obj_scale_evaluate_function(std::vector &y, const double factor) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 7 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./Headers -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c interfaceR.cpp -o interfaceR.o In file included from coco_transformation.cpp:1: In file included from ./Headers/coco_transformation.hpp:4: ./Headers/suite_bbob_legacy_code.hpp:111:13: warning: unused function 'bbob2009_compute_rotation' [-Wunused-function] 111 | static void bbob2009_compute_rotation(std::vector > &B, const long seed, const size_t DIM) { | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./Headers/suite_bbob_legacy_code.hpp:138:13: warning: unused function 'bbob2009_copy_rotation_matrix' [-Wunused-function] 138 | static void bbob2009_copy_rotation_matrix(const std::vector > &rot, std::vector > &M, std::vector &b, const size_t DIM) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./Headers/suite_bbob_legacy_code.hpp:153:13: warning: unused function 'bbob2009_compute_xopt' [-Wunused-function] 153 | static void bbob2009_compute_xopt(std::vector &xopt, const long seed, const size_t DIM) { | ^~~~~~~~~~~~~~~~~~~~~ ./Headers/suite_bbob_legacy_code.hpp:166:15: warning: unused function 'bbob2009_compute_fopt' [-Wunused-function] 166 | static double bbob2009_compute_fopt(const size_t function, const size_t instance) { | ^~~~~~~~~~~~~~~~~~~~~ In file included from coco_transformation.cpp:1: In file included from ./Headers/coco_transformation.hpp:5: ./Headers/coco_transformation_vars.hpp:129:13: warning: unused function 'transform_vars_x_hat_generic_evaluate' [-Wunused-function] 129 | static void transform_vars_x_hat_generic_evaluate(std::vector &x, const std::vector &sign_vector) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from coco_transformation.cpp:1: In file included from ./Headers/coco_transformation.hpp:6: ./Headers/coco_transformation_objs.hpp:6:13: warning: unused function 'transform_obj_norm_by_dim_evaluate' [-Wunused-function] 6 | static void transform_obj_norm_by_dim_evaluate(const int dimension,std::vector &y) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./Headers/coco_transformation_objs.hpp:64:13: warning: unused function 'transform_obj_scale_evaluate_function' [-Wunused-function] 64 | static void transform_obj_scale_evaluate_function(std::vector &y, const double factor) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from coco_transformation.cpp:1: ./Headers/coco_transformation.hpp:33:13: warning: unused function 'coco_tranformation_vars' [-Wunused-function] 33 | static void coco_tranformation_vars (std::vector &x, const int problem_id) { | ^~~~~~~~~~~~~~~~~~~~~~~ ./Headers/coco_transformation.hpp:131:13: warning: unused function 'coco_tranformation_objs' [-Wunused-function] 131 | static void coco_tranformation_objs (const std::vector &x, std::vector &y, const int problem_id) { | ^~~~~~~~~~~~~~~~~~~~~~~ 9 warnings generated. In file included from interfaceR.cpp:20: In file included from ./Headers/IOHprofiler_all_suites.hpp:11: In file included from ./Headers/IOHprofiler_PBO_suite.hpp:11: In file included from ./Headers/f_one_max.hpp:11: In file included from ./Headers/IOHprofiler_problem.h:11: In file included from ./Headers/IOHprofiler_transformation.h:10: In file included from ./Headers/coco_transformation.hpp:5: ./Headers/coco_transformation_vars.hpp:129:13: warning: unused function 'transform_vars_x_hat_generic_evaluate' [-Wunused-function] 129 | static void transform_vars_x_hat_generic_evaluate(std::vector &x, const std::vector &sign_vector) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from interfaceR.cpp:20: In file included from ./Headers/IOHprofiler_all_suites.hpp:11: In file included from ./Headers/IOHprofiler_PBO_suite.hpp:11: In file included from ./Headers/f_one_max.hpp:11: In file included from ./Headers/IOHprofiler_problem.h:11: In file included from ./Headers/IOHprofiler_transformation.h:10: In file included from ./Headers/coco_transformation.hpp:6: ./Headers/coco_transformation_objs.hpp:6:13: warning: unused function 'transform_obj_norm_by_dim_evaluate' [-Wunused-function] 6 | static void transform_obj_norm_by_dim_evaluate(const int dimension,std::vector &y) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./Headers/coco_transformation_objs.hpp:64:13: warning: unused function 'transform_obj_scale_evaluate_function' [-Wunused-function] 64 | static void transform_obj_scale_evaluate_function(std::vector &y, const double factor) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from interfaceR.cpp:20: In file included from ./Headers/IOHprofiler_all_suites.hpp:11: In file included from ./Headers/IOHprofiler_PBO_suite.hpp:11: In file included from ./Headers/f_one_max.hpp:11: In file included from ./Headers/IOHprofiler_problem.h:11: In file included from ./Headers/IOHprofiler_transformation.h:10: ./Headers/coco_transformation.hpp:33:13: warning: unused function 'coco_tranformation_vars' [-Wunused-function] 33 | static void coco_tranformation_vars (std::vector &x, const int problem_id) { | ^~~~~~~~~~~~~~~~~~~~~~~ ./Headers/coco_transformation.hpp:131:13: warning: unused function 'coco_tranformation_objs' [-Wunused-function] 131 | static void coco_tranformation_objs (const std::vector &x, std::vector &y, const int problem_id) { | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from interfaceR.cpp:20: In file included from ./Headers/IOHprofiler_all_suites.hpp:11: In file included from ./Headers/IOHprofiler_PBO_suite.hpp:14: In file included from ./Headers/f_one_max_dummy1.hpp:13: ./Headers/wmodels.hpp:168:13: warning: unused function 'layer_neutrality_compute' [-Wunused-function] 168 | static void layer_neutrality_compute(const std::vector &xIn, std::vector &xOut, const int mu){ | ^~~~~~~~~~~~~~~~~~~~~~~~ ./Headers/wmodels.hpp:228:13: warning: unused function 'layer_epistasis_compute' [-Wunused-function] 228 | static void layer_epistasis_compute(const std::vector &x, std::vector &epistasis_x, const int block_size) { | ^~~~~~~~~~~~~~~~~~~~~~~ ./Headers/wmodels.hpp:315:15: warning: unused function 'layer_compute_ruggedness' [-Wunused-function] 315 | static double layer_compute_ruggedness(const double y, size_t dimension,int gamma){ | ^~~~~~~~~~~~~~~~~~~~~~~~ 8 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++11 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o IOHexperimenter.so IOHprofiler_common.o IOHprofiler_configuration.o IOHprofiler_csv_logger.o IOHprofiler_observer.o IOHprofiler_random.o IOHprofiler_transformation.o RcppExports.o coco_transformation.o interfaceR.o make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/IOHexperimenter/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/IOHexperimenter/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/IOHexperimenter/src' installing to /data/gannet/ripley/R/packages/tests-clang/IOHexperimenter.Rcheck/00LOCK-IOHexperimenter/00new/IOHexperimenter/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IOHexperimenter)