* using log directory ‘/data/gannet/ripley/R/packages/tests-clang/HBSTM.Rcheck’
* using R Under development (unstable) (2024-04-24 r86484)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    clang version 18.1.4
    flang-new version 18.1.4
* running under: Fedora Linux 36 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘HBSTM/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HBSTM’ version ‘1.0.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HBSTM’ can be installed ... [34s/43s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-clang/HBSTM-00install.html' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [37s/46s] OK
* checking Rd files ... NOTE
checkRd: (-1) hbstm.Rd:43: Lost braces
    43 |         -\code{"all"}{: Save an object of class \code{Parameters}.}
       |                      ^
checkRd: (-1) hbstm.Rd:45: Lost braces
    45 |         -\code{"Mu"}{: Save an object of class \code{Mu}.}
       |                     ^
checkRd: (-1) hbstm.Rd:47: Lost braces
    47 |         -\code{"Mt"}{: Save an object of class \code{Mt}.}
       |                     ^
checkRd: (-1) hbstm.Rd:49: Lost braces
    49 |         -\code{"Xt"}{: Save an object of class \code{Xt}.}
       |                     ^
checkRd: (-1) hbstm.Rd:53: Lost braces
    53 |         -\code{time}{: A \code{"logical"} indicating whether the method shows the estimated time of execution.}
       |                     ^
checkRd: (-1) hbstm.Rd:55: Lost braces
    55 |         -\code{timerem}{: A \code{"logical"} indicating whether the method shows the estimated remaining time of execution}
       |                        ^
checkRd: (-1) hbstm.Rd:57: Lost braces
    57 |         -\code{seed}{: The seed to use in the function \code{"set.seed"} and set it to fit the model.}
       |                     ^
checkRd: (-1) hbstm.fit.Rd:32: Lost braces
    32 |         -\code{"all"}{: Save an object of class \code{Parameters}.}
       |                      ^
checkRd: (-1) hbstm.fit.Rd:34: Lost braces
    34 |         -\code{"Mu"}{: Save an object of class \code{Mu}.}
       |                     ^
checkRd: (-1) hbstm.fit.Rd:36: Lost braces
    36 |         -\code{"Mt"}{: Save an object of class \code{Mt}.}
       |                     ^
checkRd: (-1) hbstm.fit.Rd:38: Lost braces
    38 |         -\code{"Xt"}{: Save an object of class \code{Xt}.}
       |                     ^
checkRd: (-1) plotFit.Rd:27: Lost braces
    27 |         \item{"Zt"}{: The data in a fixed temporal observation specified by the attribute code{time}.}
       |                                                                                               ^
checkRd: (-1) plotFit.Rd:28: Lost braces
    28 |         \item{"EstZt"}{: The data estimation in a fixed temporal observation specified by the attribute code{time}.}
       |                                                                                                             ^
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... [10s/16s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 NOTE