* installing *source* package ‘GpGp’ ...
** package ‘GpGp’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 18.1.4’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/GpGp/src'
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RcppExports.cpp -o RcppExports.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c matrix_mult.cpp -o matrix_mult.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c vecchia_loglik_grad_info.cpp -o vecchia_loglik_grad_info.o
In file included from vecchia_loglik_grad_info.cpp:8:
In file included from ./onepass.h:8:
In file included from ./covmatrix_funs.h:10:
./covmatrix_funs_02.h:721:12: warning: unused variable 'nugget' [-Wunused-variable]
721 | double nugget = covparms( 0 )*covparms( 7 );
| ^~~~~~
In file included from vecchia_loglik_grad_info.cpp:8:
In file included from ./onepass.h:8:
In file included from ./covmatrix_funs.h:11:
./covmatrix_funs_03.h:95:12: warning: unused variable 'nugget' [-Wunused-variable]
95 | double nugget = covparms( 0 )*covparms( dim + 2 );
| ^~~~~~
./covmatrix_funs_03.h:229:12: warning: unused variable 'nugget' [-Wunused-variable]
229 | double nugget = covparms( 0 )*covparms( dim + 1 );
| ^~~~~~
./covmatrix_funs_03.h:337:12: warning: unused variable 'nugget' [-Wunused-variable]
337 | double nugget = covparms( 0 )*covparms( 4 );
| ^~~~~~
In file included from vecchia_loglik_grad_info.cpp:8:
In file included from ./onepass.h:8:
In file included from ./covmatrix_funs.h:17:
./covmatrix_funs_09.h:89:12: warning: unused variable 'nugget' [-Wunused-variable]
89 | double nugget = covparms( 0 )*covparms( dim + 1 );
| ^~~~~~
In file included from vecchia_loglik_grad_info.cpp:8:
In file included from ./onepass.h:8:
In file included from ./covmatrix_funs.h:18:
./covmatrix_funs_10.h:187:12: warning: unused variable 'nugget' [-Wunused-variable]
187 | double nugget = covparms( 0 )*covparms( dim + 1 );
| ^~~~~~
In file included from vecchia_loglik_grad_info.cpp:8:
In file included from ./onepass.h:8:
In file included from ./covmatrix_funs.h:19:
./covmatrix_funs_11.h:206:12: warning: unused variable 'nugget' [-Wunused-variable]
206 | double nugget = covparms( 0 )*covparms( dim + 1 );
| ^~~~~~
In file included from vecchia_loglik_grad_info.cpp:8:
In file included from ./onepass.h:8:
In file included from ./covmatrix_funs.h:20:
./covmatrix_funs_12.h:209:12: warning: unused variable 'nugget' [-Wunused-variable]
209 | double nugget = covparms( 0 )*covparms( dim + 1 );
| ^~~~~~
In file included from vecchia_loglik_grad_info.cpp:8:
In file included from ./onepass.h:8:
In file included from ./covmatrix_funs.h:21:
./covmatrix_funs_13.h:126:12: warning: unused variable 'nugget' [-Wunused-variable]
126 | double nugget = covparms( 0 )*covparms( 4 );
| ^~~~~~
./covmatrix_funs_13.h:127:9: warning: unused variable 'categ' [-Wunused-variable]
127 | double categ = covparms(0)*covparms(3);
| ^~~~~
./covmatrix_funs_13.h:542:12: warning: unused variable 'nugget' [-Wunused-variable]
542 | double nugget = covparms(0)*covparms(8);
| ^~~~~~
In file included from vecchia_loglik_grad_info.cpp:8:
./onepass.h:93:10: warning: variable 'pd' set but not used [-Wunused-but-set-variable]
93 | bool pd = true;
| ^
./onepass.h:700:9: warning: unused variable 'dim' [-Wunused-variable]
700 | int dim = locs.ncol();
| ^~~
13 warnings generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o GpGp.so RcppExports.o matrix_mult.o vecchia_loglik_grad_info.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortran_main -lFortranRuntime -lFortranDecimal -lm -fopenmp
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/GpGp/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/GpGp/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/GpGp/src'
installing to /data/gannet/ripley/R/packages/tests-clang/GpGp.Rcheck/00LOCK-GpGp/00new/GpGp/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GpGp)