* installing *source* package ‘GiRaF’ ... ** package ‘GiRaF’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘clang version 18.1.4’ using C++11 make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/GiRaF/src' /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lattice.cpp -o lattice.o In file included from lattice.cpp:1: In file included from ../inst/include/GiRaF.hpp:17: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/graph/adjacency_list.hpp:22: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/scoped_ptr.hpp:13: /data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/scoped_ptr.hpp:75:31: warning: 'auto_ptr' is deprecated [-Wdeprecated-declarations] 75 | explicit scoped_ptr( std::auto_ptr p ) BOOST_SP_NOEXCEPT : px( p.release() ) | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/graph/adjacency_list.hpp:408:18: note: in instantiation of template class 'boost::scoped_ptr' requested here 408 | property_ptr m_property; | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/graph/properties.hpp:212:40: note: in instantiation of template class 'boost::adjacency_list, boost::property>>>>>, boost::property>>>' requested here 212 | typename return_void< typename Graph::graph_tag >::type > | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/graph/properties.hpp:226:42: note: during template argument deduction for class template partial specialization 'graph_tag_or_void::type>' [with Graph = boost::adjacency_list, boost::property>>>>>, boost::property>>>] 226 | : vertex_property_selector< typename graph_tag_or_void< Graph >::type >:: | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/graph/properties.hpp:226:42: note: in instantiation of template class 'boost::detail::graph_tag_or_void, boost::property>>>>>, boost::property>>>>' requested here /data/gannet/ripley/R/test-clang/BH/include/boost/graph/properties.hpp:235:3: note: in instantiation of template class 'boost::detail::vertex_property_map, boost::property>>>>>, boost::property>>>, boost::vertex_color_t>' requested here 235 | : mpl::if_< is_same< typename detail::property_kind_from_graph< Graph, | ^ ../inst/include/GiRaF.hpp:50:16: note: in instantiation of template class 'boost::property_map, boost::property>>>>>, boost::property>>>, boost::vertex_color_t>' requested here 50 | typedef boost::property_map ::type VertexMap; | ^ /usr/local/clang18/bin/../include/c++/v1/__memory/auto_ptr.h:29:28: note: 'auto_ptr' has been explicitly marked deprecated here 29 | class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr { | ^ /usr/local/clang18/bin/../include/c++/v1/__config:989:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 989 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/local/clang18/bin/../include/c++/v1/__config:974:49: note: expanded from macro '_LIBCPP_DEPRECATED' 974 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ 1 warning generated. /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c rcpp_module.cpp -o rcpp_module.o In file included from rcpp_module.cpp:1: In file included from ../inst/include/GiRaF.hpp:17: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/graph/adjacency_list.hpp:22: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/scoped_ptr.hpp:13: /data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/scoped_ptr.hpp:75:31: warning: 'auto_ptr' is deprecated [-Wdeprecated-declarations] 75 | explicit scoped_ptr( std::auto_ptr p ) BOOST_SP_NOEXCEPT : px( p.release() ) | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/graph/adjacency_list.hpp:408:18: note: in instantiation of template class 'boost::scoped_ptr' requested here 408 | property_ptr m_property; | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/graph/properties.hpp:212:40: note: in instantiation of template class 'boost::adjacency_list, boost::property>>>>>, boost::property>>>' requested here 212 | typename return_void< typename Graph::graph_tag >::type > | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/graph/properties.hpp:226:42: note: during template argument deduction for class template partial specialization 'graph_tag_or_void::type>' [with Graph = boost::adjacency_list, boost::property>>>>>, boost::property>>>] 226 | : vertex_property_selector< typename graph_tag_or_void< Graph >::type >:: | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/graph/properties.hpp:226:42: note: in instantiation of template class 'boost::detail::graph_tag_or_void, boost::property>>>>>, boost::property>>>>' requested here /data/gannet/ripley/R/test-clang/BH/include/boost/graph/properties.hpp:235:3: note: in instantiation of template class 'boost::detail::vertex_property_map, boost::property>>>>>, boost::property>>>, boost::vertex_color_t>' requested here 235 | : mpl::if_< is_same< typename detail::property_kind_from_graph< Graph, | ^ ../inst/include/GiRaF.hpp:50:16: note: in instantiation of template class 'boost::property_map, boost::property>>>>>, boost::property>>>, boost::vertex_color_t>' requested here 50 | typedef boost::property_map ::type VertexMap; | ^ /usr/local/clang18/bin/../include/c++/v1/__memory/auto_ptr.h:29:28: note: 'auto_ptr' has been explicitly marked deprecated here 29 | class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr { | ^ /usr/local/clang18/bin/../include/c++/v1/__config:989:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 989 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/local/clang18/bin/../include/c++/v1/__config:974:49: note: expanded from macro '_LIBCPP_DEPRECATED' 974 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ 1 warning generated. /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c recursion.cpp -o recursion.o In file included from recursion.cpp:1: In file included from ../inst/include/GiRaF.hpp:17: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/graph/adjacency_list.hpp:22: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/scoped_ptr.hpp:13: /data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/scoped_ptr.hpp:75:31: warning: 'auto_ptr' is deprecated [-Wdeprecated-declarations] 75 | explicit scoped_ptr( std::auto_ptr p ) BOOST_SP_NOEXCEPT : px( p.release() ) | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/graph/adjacency_list.hpp:408:18: note: in instantiation of template class 'boost::scoped_ptr' requested here 408 | property_ptr m_property; | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/graph/properties.hpp:212:40: note: in instantiation of template class 'boost::adjacency_list, boost::property>>>>>, boost::property>>>' requested here 212 | typename return_void< typename Graph::graph_tag >::type > | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/graph/properties.hpp:226:42: note: during template argument deduction for class template partial specialization 'graph_tag_or_void::type>' [with Graph = boost::adjacency_list, boost::property>>>>>, boost::property>>>] 226 | : vertex_property_selector< typename graph_tag_or_void< Graph >::type >:: | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/graph/properties.hpp:226:42: note: in instantiation of template class 'boost::detail::graph_tag_or_void, boost::property>>>>>, boost::property>>>>' requested here /data/gannet/ripley/R/test-clang/BH/include/boost/graph/properties.hpp:235:3: note: in instantiation of template class 'boost::detail::vertex_property_map, boost::property>>>>>, boost::property>>>, boost::vertex_color_t>' requested here 235 | : mpl::if_< is_same< typename detail::property_kind_from_graph< Graph, | ^ ../inst/include/GiRaF.hpp:50:16: note: in instantiation of template class 'boost::property_map, boost::property>>>>>, boost::property>>>, boost::vertex_color_t>' requested here 50 | typedef boost::property_map ::type VertexMap; | ^ /usr/local/clang18/bin/../include/c++/v1/__memory/auto_ptr.h:29:28: note: 'auto_ptr' has been explicitly marked deprecated here 29 | class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr { | ^ /usr/local/clang18/bin/../include/c++/v1/__config:989:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 989 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/local/clang18/bin/../include/c++/v1/__config:974:49: note: expanded from macro '_LIBCPP_DEPRECATED' 974 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ 1 warning generated. /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c sampler.cpp -o sampler.o In file included from sampler.cpp:1: In file included from ../inst/include/GiRaF.hpp:17: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/graph/adjacency_list.hpp:22: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/scoped_ptr.hpp:13: /data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/scoped_ptr.hpp:75:31: warning: 'auto_ptr' is deprecated [-Wdeprecated-declarations] 75 | explicit scoped_ptr( std::auto_ptr p ) BOOST_SP_NOEXCEPT : px( p.release() ) | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/graph/adjacency_list.hpp:408:18: note: in instantiation of template class 'boost::scoped_ptr' requested here 408 | property_ptr m_property; | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/graph/properties.hpp:212:40: note: in instantiation of template class 'boost::adjacency_list, boost::property>>>>>, boost::property>>>' requested here 212 | typename return_void< typename Graph::graph_tag >::type > | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/graph/properties.hpp:226:42: note: during template argument deduction for class template partial specialization 'graph_tag_or_void::type>' [with Graph = boost::adjacency_list, boost::property>>>>>, boost::property>>>] 226 | : vertex_property_selector< typename graph_tag_or_void< Graph >::type >:: | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/graph/properties.hpp:226:42: note: in instantiation of template class 'boost::detail::graph_tag_or_void, boost::property>>>>>, boost::property>>>>' requested here /data/gannet/ripley/R/test-clang/BH/include/boost/graph/properties.hpp:235:3: note: in instantiation of template class 'boost::detail::vertex_property_map, boost::property>>>>>, boost::property>>>, boost::vertex_color_t>' requested here 235 | : mpl::if_< is_same< typename detail::property_kind_from_graph< Graph, | ^ ../inst/include/GiRaF.hpp:50:16: note: in instantiation of template class 'boost::property_map, boost::property>>>>>, boost::property>>>, boost::vertex_color_t>' requested here 50 | typedef boost::property_map ::type VertexMap; | ^ /usr/local/clang18/bin/../include/c++/v1/__memory/auto_ptr.h:29:28: note: 'auto_ptr' has been explicitly marked deprecated here 29 | class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr { | ^ /usr/local/clang18/bin/../include/c++/v1/__config:989:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 989 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/local/clang18/bin/../include/c++/v1/__config:974:49: note: expanded from macro '_LIBCPP_DEPRECATED' 974 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ 1 warning generated. /usr/local/clang18/bin/clang++ -std=gnu++11 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o GiRaF.so lattice.o rcpp_module.o recursion.o sampler.o make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/GiRaF/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/GiRaF/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/GiRaF/src' installing to /data/gannet/ripley/R/packages/tests-clang/GiRaF.Rcheck/00LOCK-GiRaF/00new/GiRaF/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GiRaF)