* installing *source* package ‘DynamicGP’ ... ** package ‘DynamicGP’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘clang version 18.1.4’ using Fortran compiler: ‘flang-new version 18.1.4’ using C++ compiler: ‘clang version 18.1.4’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/DynamicGP/src' /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -Iinclude -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c covar_sep.c -o covar_sep.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -Iinclude -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c cpputil.cpp -o cpputil.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -Iinclude -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c exceptions.cpp -o exceptions.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -Iinclude -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c gp_sep.cpp -o gp_sep.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -Iinclude -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c gpsepWraper.cpp -o gpsepWraper.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -Iinclude -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c gpseplm.cpp -o gpseplm.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -Iinclude -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c gpseplmWraper.cpp -o gpseplmWraper.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -Iinclude -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lasvdgp.cpp -o lasvdgp.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -Iinclude -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c lasvdgpms.cpp -o lasvdgpms.o /usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c lautil.f -o lautil.o ./lautil.f:44:7: warning: Reference to the procedure 'dgeqrf' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes call dgeqrf(n,n,A,n,work,work,lwork,info) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ./lautil.f:25:7: previous reference to 'dgeqrf' call dgeqrf(n,n,A,lda,tau,work,wsiz,info) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ /usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c lbfgsb.f -o lbfgsb.o ./lbfgsb.f:1625:10: warning: Reference to the procedure 'dscal' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes call dscal(col,theta,p(col+1),1) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ./lbfgsb.f:954:10: previous reference to 'dscal' call dscal(n,stp,d,1) ^^^^^^^^^^^^^^^^^^^^^ ./lbfgsb.f:2151:16: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes call dcopy(m-jy,wn1(jy+1,jy+1),1,wn1(jy,jy),1) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ./lbfgsb.f:702:10: previous reference to 'dcopy' call dcopy(n,x,1,z,1) ^^^^^^^^^^^^^^^^^^^^^ ./lbfgsb.f:2152:16: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes call dcopy(m-jy,wn1(js+1,js+1),1,wn1(js,js),1) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ./lbfgsb.f:702:10: previous reference to 'dcopy' call dcopy(n,x,1,z,1) ^^^^^^^^^^^^^^^^^^^^^ ./lbfgsb.f:2153:16: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes call dcopy(m-1,wn1(m+2,jy+1),1,wn1(m+1,jy),1) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ./lbfgsb.f:702:10: previous reference to 'dcopy' call dcopy(n,x,1,z,1) ^^^^^^^^^^^^^^^^^^^^^ ./lbfgsb.f:2314:7: warning: Reference to the procedure 'dpofa' has an implicit interface that is distinct from another reference: incompatible dummy argument #1: incompatible dummy data object shapes call dpofa(wn(col+1,col+1),m2,col,info) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ./lbfgsb.f:2291:7: previous reference to 'dpofa' call dpofa(wn,m2,col,info) ^^^^^^^^^^^^^^^^^^^^^^^^^^ ./lbfgsb.f:2810:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes call dcopy(n,d,1,ws(1,itail),1) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ./lbfgsb.f:702:10: previous reference to 'dcopy' call dcopy(n,x,1,z,1) ^^^^^^^^^^^^^^^^^^^^^ ./lbfgsb.f:2811:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes call dcopy(n,r,1,wy(1,itail),1) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ./lbfgsb.f:702:10: previous reference to 'dcopy' call dcopy(n,x,1,z,1) ^^^^^^^^^^^^^^^^^^^^^ ./lbfgsb.f:2824:13: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes call dcopy(j,ss(2,j+1),1,ss(1,j),1) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ./lbfgsb.f:702:10: previous reference to 'dcopy' call dcopy(n,x,1,z,1) ^^^^^^^^^^^^^^^^^^^^^ ./lbfgsb.f:2825:13: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes call dcopy(col-j,sy(j+1,j+1),1,sy(j,j),1) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ./lbfgsb.f:702:10: previous reference to 'dcopy' call dcopy(n,x,1,z,1) ^^^^^^^^^^^^^^^^^^^^^ ./lbfgsb.f:3495:7: warning: Reference to the procedure 'dtrsl' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes call dtrsl(wn,m2,col2,wv,11,info) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ./lbfgsb.f:1289:7: previous reference to 'dtrsl' call dtrsl(wt,m,col,p(col+1),11,info) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ./lbfgsb.f:3500:7: warning: Reference to the procedure 'dtrsl' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes call dtrsl(wn,m2,col2,wv,01,info) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ./lbfgsb.f:1289:7: previous reference to 'dtrsl' call dtrsl(wt,m,col,p(col+1),11,info) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -Iinclude -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c lbfgsb_c.c -o lbfgsb_c.o /usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c limhpar.f -o limhpar.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -Iinclude -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c linalg.c -o linalg.o /usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c liqrev.f -o liqrev.o ./liqrev.f:87:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes call dcopy(n,b,1,x,1) ^^^^^^^^^^^^^^^^^^^^^ ./liqrev.f:84:10: previous reference to 'dcopy' call dcopy(n-j+1,r(j,j),ldr,r(j,j),1) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ /usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c liqrup.f -o liqrup.o /usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c lirslv.f -o lirslv.o ./lirslv.f:73:17: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes call dcopy (n-k+1,R(k,k),1,R(k,k),ldr) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ./lirslv.f:55:11: previous reference to 'dcopy' call dcopy(n,qtf,1,dn,1) ^^^^^^^^^^^^^^^^^^^^^^^^ /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -Iinclude -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c matrix.c -o matrix.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -Iinclude -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c maximinLHS.c -o maximinLHS.o /usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c mydgemv.f -o mydgemv.o /usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c mydtrmv.f -o mydtrmv.o /usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c mydtrsv.f -o mydtrsv.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -Iinclude -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c nleqslv.c -o nleqslv.o /usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c nwbjac.f -o nwbjac.o /usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c nwbrdn.f -o nwbrdn.o /usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c nwclsh.f -o nwclsh.o /usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c nwddlg.f -o nwddlg.o /usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c nwglsh.f -o nwglsh.o /usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c nwmhlm.f -o nwmhlm.o /usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c nwnjac.f -o nwnjac.o /usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c nwnleq.f -o nwnleq.o /usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c nwnwtn.f -o nwnwtn.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -Iinclude -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c nwout.c -o nwout.o /usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c nwpdlg.f -o nwpdlg.o /usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c nwpure.f -o nwpure.o /usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c nwqlsh.f -o nwqlsh.o /usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c nwtrup.f -o nwtrup.o /usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c nwutil.f -o nwutil.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -Iinclude -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c oeiinfo.c -o oeiinfo.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -Iinclude -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c random.c -o random.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -Iinclude -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c registration.c -o registration.o /usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c sdblepr.f -o sdblepr.o /usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c timer.f -o timer.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -Iinclude -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c util.c -o util.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -Iinclude -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c utilWraper.c -o utilWraper.o /usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o DynamicGP.so covar_sep.o cpputil.o exceptions.o gp_sep.o gpsepWraper.o gpseplm.o gpseplmWraper.o lasvdgp.o lasvdgpms.o lautil.o lbfgsb.o lbfgsb_c.o limhpar.o linalg.o liqrev.o liqrup.o lirslv.o matrix.o maximinLHS.o mydgemv.o mydtrmv.o mydtrsv.o nleqslv.o nwbjac.o nwbrdn.o nwclsh.o nwddlg.o nwglsh.o nwmhlm.o nwnjac.o nwnleq.o nwnwtn.o nwout.o nwpdlg.o nwpure.o nwqlsh.o nwtrup.o nwutil.o oeiinfo.o random.o registration.o sdblepr.o timer.o util.o utilWraper.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortran_main -lFortranRuntime -lFortranDecimal -lm -fopenmp -lFortran_main -lFortranRuntime -lFortranDecimal -lm make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/DynamicGP/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/DynamicGP/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/DynamicGP/src' installing to /data/gannet/ripley/R/packages/tests-clang/DynamicGP.Rcheck/00LOCK-DynamicGP/00new/DynamicGP/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DynamicGP)